Analysis of interatomic Contacts of Structural Units in PDB entry:
9HM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HM5 entry

There are 4 chains in PDB entry 9HM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 1158
B
 A 19 U 65
C
 A 7 A 40
D
 A 73 A 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9HM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
228 240Right-handed alpha
Helix 2
AA2
A
245 250Right-handed 310
Helix 3
AA3
A
255 270Right-handed alpha
Helix 4
AA4
A
292 314Right-handed alpha
Helix 5
AA5
A
316 322Right-handed alpha
Helix 6
AA6
A
332 355Right-handed alpha
Helix 7
AA7
A
359 370Right-handed alpha
Helix 8
AA8
A
371 384Right-handed alpha
Helix 9
AA9
A
384 418Right-handed alpha
Helix 10
AB1
A
441 453Right-handed alpha
Helix 11
AB2
A
471 481Right-handed alpha
Helix 12
AB3
A
488 492Right-handed 310
Helix 13
AB4
A
494 498Right-handed 310
Helix 14
AB5
A
509 514Right-handed 310
Helix 15
AB6
A
516 530Right-handed alpha
Helix 16
AB7
A
532 537Right-handed alpha
Helix 17
AB8
A
540 548Right-handed alpha
Helix 18
AB9
A
555 568Right-handed alpha
Helix 19
AC1
A
579 586Right-handed alpha
Helix 20
AC2
A
595 599Right-handed 310
Helix 21
AC3
A
607 617Right-handed alpha
Helix 22
AC4
A
619 624Right-handed 310
Helix 23
AC5
A
642 649Right-handed alpha
Helix 24
AC6
A
685 697Right-handed alpha
Helix 25
AC7
A
698 700Right-handed 310
Helix 26
AC8
A
725 729Right-handed 310
Helix 27
AC9
A
732 742Right-handed alpha
Helix 28
AD1
A
742 747Right-handed alpha
Helix 29
AD2
A
774 779Right-handed alpha
Helix 30
AD3
A
779 787Right-handed alpha
Helix 31
AD4
A
790 801Right-handed alpha
Helix 32
AD5
A
827 846Right-handed alpha
Helix 33
AD6
A
866 878Right-handed alpha
Helix 34
AD7
A
889 900Right-handed alpha
Helix 35
AD8
A
909 914Right-handed alpha
Helix 36
AD9
A
968 970Right-handed 310
Helix 37
AE1
A
971 977Right-handed alpha
Helix 38
AE2
A
997 1024Right-handed alpha
Helix 39
AE3
A
1036 1046Right-handed alpha
Helix 40
AE4
A
1050 1064Right-handed alpha
Helix 41
AE5
A
1073 1078Right-handed alpha
Helix 42
AE6
A
1128 1132Right-handed 310
Helix 43
AE7
A
1135 1137Right-handed 310
Helix 44
AE8
A
1138 1157Right-handed alpha
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There are 9 sheets in PDB entry 9HM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
428 430anti-parallel
Strand 3
A
433 440anti-parallel
Strand 4
A
589 594anti-parallel
Strand 5
A
6 18anti-parallel
Strand 6
A
663 672anti-parallel
Strand 7
A
629 639anti-parallel
Strand 8
A
209 215anti-parallel
Strand 9
A
423 426parallel
Strand 10
A
433 440anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
289 291parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 468first strand
Strand 2
A
569 570anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 724first strand
Strand 2
A
707 712anti-parallel
Strand 3
A
1027 1032parallel
Strand 4
A
1095 1098parallel
Strand 5
A
1090 1092anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 753first strand
Strand 2
A
802 807anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
759 761first strand
Strand 2
A
767 769anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 818first strand
Strand 2
A
821 823anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
857 861first strand
Strand 2
A
933 939anti-parallel
Strand 3
A
952 958anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1106 1107first strand
Strand 2
A
1111 1114anti-parallel
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