Analysis of interatomic Contacts of Structural Units in PDB entry:
9HM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HM6 entry

There are 3 chains in PDB entry 9HM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 1158
B
 A 18 A 64
C
 U 8 A 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9HM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 26Right-handed 310
Helix 2
AA2
A
219 223Right-handed 310
Helix 3
AA3
A
230 237Right-handed alpha
Helix 4
AA4
A
242 250Right-handed 310
Helix 5
AA5
A
255 270Right-handed alpha
Helix 6
AA6
A
292 314Right-handed alpha
Helix 7
AA7
A
316 323Right-handed alpha
Helix 8
AA8
A
332 355Right-handed alpha
Helix 9
AA9
A
358 384Right-handed alpha
Helix 10
AB1
A
384 415Right-handed alpha
Helix 11
AB2
A
441 453Right-handed alpha
Helix 12
AB3
A
471 480Right-handed alpha
Helix 13
AB4
A
481 486Right-handed 310
Helix 14
AB5
A
488 493Right-handed alpha
Helix 15
AB6
A
494 498Right-handed 310
Helix 16
AB7
A
509 513Right-handed 310
Helix 17
AB8
A
516 530Right-handed alpha
Helix 18
AB9
A
530 535Right-handed alpha
Helix 19
AC1
A
540 548Right-handed alpha
Helix 20
AC2
A
555 568Right-handed alpha
Helix 21
AC3
A
577 587Right-handed alpha
Helix 22
AC4
A
607 618Right-handed alpha
Helix 23
AC5
A
618 624Right-handed alpha
Helix 24
AC6
A
642 646Right-handed 310
Helix 25
AC7
A
685 698Right-handed alpha
Helix 26
AC8
A
725 729Right-handed 310
Helix 27
AC9
A
732 741Right-handed alpha
Helix 28
AD1
A
742 747Right-handed alpha
Helix 29
AD2
A
773 778Right-handed 310
Helix 30
AD3
A
779 788Right-handed alpha
Helix 31
AD4
A
790 801Right-handed alpha
Helix 32
AD5
A
827 848Right-handed alpha
Helix 33
AD6
A
866 875Right-handed alpha
Helix 34
AD7
A
876 878Right-handed 310
Helix 35
AD8
A
879 884Right-handed alpha
Helix 36
AD9
A
887 900Right-handed alpha
Helix 37
AE1
A
908 919Right-handed alpha
Helix 38
AE2
A
952 956Right-handed 310
Helix 39
AE3
A
961 966Right-handed 310
Helix 40
AE4
A
968 982Right-handed alpha
Helix 41
AE5
A
983 986Right-handed 310
Helix 42
AE6
A
989 1024Right-handed alpha
Helix 43
AE7
A
1050 1064Right-handed alpha
Helix 44
AE8
A
1073 1077Right-handed 310
Helix 45
AE9
A
1135 1155Right-handed alpha
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There are 7 sheets in PDB entry 9HM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 574first strand
Strand 2
A
463 468anti-parallel
Strand 3
A
423 430anti-parallel
Strand 4
A
433 440anti-parallel
Strand 5
A
589 594anti-parallel
Strand 6
A
6 18anti-parallel
Strand 7
A
664 672anti-parallel
Strand 8
A
629 638anti-parallel
Strand 9
A
209 215anti-parallel
Strand 10
A
423 430parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
289 291parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 810first strand
Strand 2
A
721 724anti-parallel
Strand 3
A
707 711anti-parallel
Strand 4
A
1027 1032parallel
Strand 5
A
1095 1098parallel
Strand 6
A
1090 1092anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 753first strand
Strand 2
A
802 807anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
759 761first strand
Strand 2
A
767 769anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 818first strand
Strand 2
A
821 823anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
856 858first strand
Strand 2
A
938 940anti-parallel
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