Analysis of interatomic Contacts of Structural Units in PDB entry:
9HMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HMA entry

There is 1 chain in PDB entry 9HMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 329ARG 2177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 9HMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
329 350Right-handed alpha
Helix 2
AA2
A
357 381Right-handed alpha
Helix 3
AA3
A
390 414Right-handed alpha
Helix 4
AA4
A
418 442Right-handed alpha
Helix 5
AA5
A
451 470Right-handed alpha
Helix 6
AA6
A
472 547Right-handed alpha
Helix 7
AA7
A
556 575Right-handed alpha
Helix 8
AA8
A
577 591Right-handed alpha
Helix 9
AA9
A
595 598Right-handed 310
Helix 10
AB1
A
599 616Right-handed alpha
Helix 11
AB2
A
619 624Right-handed alpha
Helix 12
AB3
A
625 631Right-handed alpha
Helix 13
AB4
A
634 652Right-handed alpha
Helix 14
AB5
A
656 671Right-handed alpha
Helix 15
AB6
A
675 694Right-handed alpha
Helix 16
AB7
A
705 720Right-handed alpha
Helix 17
AB8
A
723 725Right-handed 310
Helix 18
AB9
A
726 761Right-handed alpha
Helix 19
AC1
A
775 782Right-handed alpha
Helix 20
AC2
A
785 791Right-handed alpha
Helix 21
AC3
A
795 817Right-handed alpha
Helix 22
AC4
A
825 843Right-handed alpha
Helix 23
AC5
A
845 863Right-handed alpha
Helix 24
AC6
A
865 884Right-handed alpha
Helix 25
AC7
A
886 901Right-handed alpha
Helix 26
AC8
A
907 928Right-handed alpha
Helix 27
AC9
A
930 944Right-handed alpha
Helix 28
AD1
A
945 949Right-handed 310
Helix 29
AD2
A
951 969Right-handed alpha
Helix 30
AD3
A
977 986Right-handed alpha
Helix 31
AD4
A
991 1012Right-handed alpha
Helix 32
AD5
A
1031 1059Right-handed alpha
Helix 33
AD6
A
1061 1079Right-handed alpha
Helix 34
AD7
A
1080 1098Right-handed alpha
Helix 35
AD8
A
1100 1119Right-handed alpha
Helix 36
AD9
A
1194 1199Right-handed 310
Helix 37
AE1
A
1205 1210Right-handed alpha
Helix 38
AE2
A
1210 1231Right-handed alpha
Helix 39
AE3
A
1236 1264Right-handed alpha
Helix 40
AE4
A
1274 1294Right-handed alpha
Helix 41
AE5
A
1297 1301Right-handed 310
Helix 42
AE6
A
1302 1314Right-handed alpha
Helix 43
AE7
A
1315 1317Right-handed 310
Helix 44
AE8
A
1318 1335Right-handed alpha
Helix 45
AE9
A
1342 1346Right-handed 310
Helix 46
AF1
A
1630 1646Right-handed alpha
Helix 47
AF2
A
1652 1666Right-handed alpha
Helix 48
AF3
A
1669 1679Right-handed alpha
Helix 49
AF4
A
1682 1701Right-handed alpha
Helix 50
AF5
A
1725 1735Right-handed alpha
Helix 51
AF6
A
1745 1757Right-handed alpha
Helix 52
AF7
A
1806 1826Right-handed alpha
Helix 53
AF8
A
1829 1855Right-handed alpha
Helix 54
AF9
A
1856 1864Right-handed 310
Helix 55
AG1
A
1871 1887Right-handed alpha
Helix 56
AG2
A
1892 1901Right-handed alpha
Helix 57
AG3
A
1907 1919Right-handed alpha
Helix 58
AG4
A
1922 1938Right-handed alpha
Helix 59
AG5
A
1960 1964Right-handed 310
Helix 60
AG6
A
1977 1990Right-handed alpha
Helix 61
AG7
A
1994 1999Right-handed alpha
Helix 62
AG8
A
2016 2028Right-handed alpha
Helix 63
AG9
A
2041 2051Right-handed alpha
Helix 64
AH1
A
2068 2074Right-handed alpha
Helix 65
AH2
A
2101 2109Right-handed alpha
Helix 66
AH3
A
2125 2139Right-handed alpha
Helix 67
AH4
A
2145 2153Right-handed alpha
Helix 68
AH5
A
2154 2156Right-handed 310
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There are 2 sheets in PDB entry 9HMA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1791 1799first strand
Strand 2
A
1781 1788anti-parallel
Strand 3
A
1763 1771anti-parallel
Strand 4
A
1947 1952parallel
Strand 5
A
1972 1974parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2032 2036first strand
Strand 2
A
2005 2009parallel
Strand 3
A
2054 2057parallel
Strand 4
A
2080 2083parallel
Strand 5
A
2113 2117parallel
Strand 6
A
2167 2171anti-parallel
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