Analysis of interatomic Contacts of Structural Units in PDB entry:
9HMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HMB entry

There is 1 chain in PDB entry 9HMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 26ASP 682
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 9HMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 49Right-handed 310
Helix 2
AA2
A
111 114Right-handed 310
Helix 3
AA3
A
174 177Right-handed 310
Helix 4
AA4
A
178 185Right-handed alpha
Helix 5
AA5
A
186 189Right-handed 310
Helix 6
AA6
A
223 231Right-handed alpha
Helix 7
AA7
A
233 240Right-handed 310
Helix 8
AA8
A
288 305Right-handed alpha
Helix 9
AA9
A
307 325Right-handed alpha
Helix 10
AB1
A
339 364Right-handed alpha
Helix 11
AB2
A
386 390Right-handed 310
Helix 12
AB3
A
410 419Right-handed alpha
Helix 13
AB4
A
420 425Right-handed alpha
Helix 14
AB5
A
426 453Right-handed alpha
Helix 15
AB6
A
470 475Right-handed alpha
Helix 16
AB7
A
493 510Right-handed alpha
Helix 17
AB8
A
511 518Right-handed alpha
Helix 18
AB9
A
518 533Right-handed alpha
Helix 19
AC1
A
565 580Right-handed alpha
Helix 20
AC2
A
587 600Right-handed alpha
Helix 21
AC3
A
612 616Right-handed 310
Helix 22
AC4
A
623 627Right-handed 310
Helix 23
AC5
A
649 655Right-handed 310
Helix 24
AC6
A
667 677Right-handed alpha
Helix 25
AC7
A
688 696Right-handed alpha
Helix 26
AC8
A
698 711Right-handed alpha
Helix 27
AC9
A
724 728Right-handed 310
Helix 28
AD1
A
743 747Right-handed 310
Helix 29
AD2
A
755 770Right-handed alpha
Helix 30
AD3
A
818 823Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 9HMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
129 133anti-parallel
Strand 5
A
139 145anti-parallel
Strand 6
A
274 285anti-parallel
Strand 7
A
247 254anti-parallel
Strand 8
A
212 218anti-parallel
Strand 9
A
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
57 63anti-parallel
Strand 3
A
69 75anti-parallel
Strand 4
A
89 95anti-parallel
Strand 5
A
154 159anti-parallel
Strand 6
A
265 268anti-parallel
Strand 7
A
258 262anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
195 198anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 332first strand
Strand 2
A
788 796anti-parallel
Strand 3
A
800 807anti-parallel
Strand 4
A
810 817anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 536first strand
Strand 2
A
542 543anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 564first strand
Strand 2
A
638 640anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 608first strand
Strand 2
A
633 635anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
771 774first strand
Strand 2
A
777 780anti-parallel
Strand 3
A
825 827parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il