Analysis of interatomic Contacts of Structural Units in PDB entry:
9HMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HMH entry

There is 1 chain in PDB entry 9HMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 34THR 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 9HMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
207 211Right-handed 310
Helix 2
AA2
A
330 336Right-handed alpha
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There are 5 sheets in PDB entry 9HMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
63 71anti-parallel
Strand 3
A
131 139anti-parallel
Strand 4
A
91 95anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
169 176parallel
Strand 3
A
149 157anti-parallel
Strand 4
A
80 86anti-parallel
Strand 5
A
115 123anti-parallel
Strand 6
A
107 112anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 188first strand
Strand 2
A
214 223anti-parallel
Strand 3
A
319 329anti-parallel
Strand 4
A
248 254anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 194first strand
Strand 2
A
366 377parallel
Strand 3
A
342 354anti-parallel
Strand 4
A
231 242anti-parallel
Strand 5
A
304 312anti-parallel
Strand 6
A
257 260anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
231 242anti-parallel
Strand 3
A
342 354anti-parallel
Strand 4
A
297 299parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il