Analysis of interatomic Contacts of Structural Units in PDB entry:
9HMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HMM entry

There are 2 chains in PDB entry 9HMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14ASN 175
B
 GLN 25PRO 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9HMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed alpha
Helix 2
AA2
A
21 39Right-handed alpha
Helix 3
AA3
A
61 66Right-handed alpha
Helix 4
AA4
A
71 88Right-handed alpha
Helix 5
AA5
A
90 96Right-handed alpha
Helix 6
AA6
A
107 117Right-handed alpha
Helix 7
AA7
A
159 174Right-handed alpha
Helix 8
AA8
B
33 38Right-handed alpha
Helix 9
AA9
B
52 54Right-handed 310
Helix 10
AB1
B
55 67Right-handed alpha
Helix 11
AB2
B
105 110Right-handed alpha
Helix 12
AB3
B
135 146Right-handed alpha
Helix 13
AB4
B
166 191Right-handed alpha
Helix 14
AB5
B
223 236Right-handed alpha
Helix 15
AB6
B
257 268Right-handed alpha
Helix 16
AB7
B
288 292Right-handed 310
Helix 17
AB8
B
306 311Right-handed alpha
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There are 3 sheets in PDB entry 9HMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 59first strand
Strand 2
A
45 50anti-parallel
Strand 3
A
98 104anti-parallel
Strand 4
A
121 126parallel
Strand 5
A
153 155parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
300 303anti-parallel
Strand 3
B
271 276parallel
Strand 4
B
249 254parallel
Strand 5
B
196 200anti-parallel
Strand 6
B
207 212anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
88 96anti-parallel
Strand 3
B
42 50anti-parallel
Strand 4
B
124 129anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il