Analysis of interatomic Contacts of Structural Units in PDB entry:
9HMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HMS entry

There are 3 chains in PDB entry 9HMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 84LEU 1049
B
 LYS 321GLU 457
C
 TRP 576ARG 2120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are109 helices in PDB entry 9HMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 90Right-handed alpha
Helix 2
AA2
A
95 109Right-handed alpha
Helix 3
AA3
A
114 124Right-handed alpha
Helix 4
AA4
A
140 142Right-handed 310
Helix 5
AA5
A
143 151Right-handed alpha
Helix 6
AA6
A
165 187Right-handed alpha
Helix 7
AA7
A
196 210Right-handed alpha
Helix 8
AA8
A
212 250Right-handed alpha
Helix 9
AA9
A
262 292Right-handed alpha
Helix 10
AB1
A
295 299Right-handed 310
Helix 11
AB2
A
301 319Right-handed alpha
Helix 12
AB3
A
330 335Right-handed alpha
Helix 13
AB4
A
336 338Right-handed 310
Helix 14
AB5
A
341 356Right-handed alpha
Helix 15
AB6
A
361 378Right-handed alpha
Helix 16
AB7
A
379 381Right-handed 310
Helix 17
AB8
A
383 401Right-handed alpha
Helix 18
AB9
A
406 416Right-handed alpha
Helix 19
AC1
A
417 419Right-handed 310
Helix 20
AC2
A
421 437Right-handed alpha
Helix 21
AC3
A
458 471Right-handed alpha
Helix 22
AC4
A
477 483Right-handed alpha
Helix 23
AC5
A
494 504Right-handed alpha
Helix 24
AC6
A
514 534Right-handed alpha
Helix 25
AC7
A
549 578Right-handed alpha
Helix 26
AC8
A
581 589Right-handed alpha
Helix 27
AC9
A
590 595Right-handed 310
Helix 28
AD1
A
597 602Right-handed alpha
Helix 29
AD2
A
606 621Right-handed alpha
Helix 30
AD3
A
627 640Right-handed alpha
Helix 31
AD4
A
646 674Right-handed alpha
Helix 32
AD5
A
681 698Right-handed alpha
Helix 33
AD6
A
708 723Right-handed alpha
Helix 34
AD7
A
726 747Right-handed alpha
Helix 35
AD8
A
754 777Right-handed alpha
Helix 36
AD9
A
780 798Right-handed alpha
Helix 37
AE1
A
799 804Right-handed 310
Helix 38
AE2
A
807 811Right-handed 310
Helix 39
AE3
A
818 833Right-handed alpha
Helix 40
AE4
A
852 874Right-handed alpha
Helix 41
AE5
A
878 881Right-handed 310
Helix 42
AE6
A
882 887Right-handed alpha
Helix 43
AE7
A
888 893Right-handed 310
Helix 44
AE8
A
897 911Right-handed alpha
Helix 45
AE9
A
911 932Right-handed alpha
Helix 46
AF1
A
943 959Right-handed alpha
Helix 47
AF2
A
965 982Right-handed alpha
Helix 48
AF3
A
998 1004Right-handed alpha
Helix 49
AF4
A
1005 1010Right-handed 310
Helix 50
AF5
A
1011 1027Right-handed alpha
Helix 51
AF6
A
1027 1033Right-handed alpha
Helix 52
AF7
A
1035 1037Right-handed 310
Helix 53
AF8
A
1038 1049Right-handed alpha
Helix 54
AF9
B
333 343Right-handed alpha
Helix 55
AG1
B
357 367Right-handed alpha
Helix 56
AG2
B
368 373Right-handed alpha
Helix 57
AG3
B
382 391Right-handed alpha
Helix 58
AG4
B
413 420Right-handed alpha
Helix 59
AG5
C
577 595Right-handed alpha
Helix 60
AG6
C
599 614Right-handed alpha
Helix 61
AG7
C
618 637Right-handed alpha
Helix 62
AG8
C
641 646Right-handed alpha
Helix 63
AG9
C
648 661Right-handed alpha
Helix 64
AH1
C
669 703Right-handed alpha
Helix 65
AH2
C
730 735Right-handed alpha
Helix 66
AH3
C
739 758Right-handed alpha
Helix 67
AH4
C
768 786Right-handed alpha
Helix 68
AH5
C
788 806Right-handed alpha
Helix 69
AH6
C
808 827Right-handed alpha
Helix 70
AH7
C
828 843Right-handed alpha
Helix 71
AH8
C
850 871Right-handed alpha
Helix 72
AH9
C
873 887Right-handed alpha
Helix 73
AI1
C
888 892Right-handed 310
Helix 74
AI2
C
894 913Right-handed alpha
Helix 75
AI3
C
920 931Right-handed alpha
Helix 76
AI4
C
934 954Right-handed alpha
Helix 77
AI5
C
974 1002Right-handed alpha
Helix 78
AI6
C
1003 1022Right-handed alpha
Helix 79
AI7
C
1023 1041Right-handed alpha
Helix 80
AI8
C
1043 1062Right-handed alpha
Helix 81
AI9
C
1148 1153Right-handed alpha
Helix 82
AJ1
C
1153 1175Right-handed alpha
Helix 83
AJ2
C
1178 1207Right-handed alpha
Helix 84
AJ3
C
1219 1237Right-handed alpha
Helix 85
AJ4
C
1241 1256Right-handed alpha
Helix 86
AJ5
C
1261 1278Right-handed alpha
Helix 87
AJ6
C
1573 1590Right-handed alpha
Helix 88
AJ7
C
1593 1609Right-handed alpha
Helix 89
AJ8
C
1612 1622Right-handed alpha
Helix 90
AJ9
C
1625 1642Right-handed alpha
Helix 91
AK1
C
1668 1678Right-handed alpha
Helix 92
AK2
C
1691 1700Right-handed alpha
Helix 93
AK3
C
1749 1768Right-handed alpha
Helix 94
AK4
C
1772 1797Right-handed alpha
Helix 95
AK5
C
1814 1818Right-handed 310
Helix 96
AK6
C
1825 1830Right-handed alpha
Helix 97
AK7
C
1845 1849Right-handed 310
Helix 98
AK8
C
1850 1862Right-handed alpha
Helix 99
AK9
C
1865 1880Right-handed alpha
Helix 100
AL1
C
1920 1933Right-handed alpha
Helix 101
AL2
C
1936 1941Right-handed alpha
Helix 102
AL3
C
1958 1965Right-handed alpha
Helix 103
AL4
C
1966 1972Right-handed alpha
Helix 104
AL5
C
1984 1995Right-handed alpha
Helix 105
AL6
C
2011 2017Right-handed alpha
Helix 106
AL7
C
2045 2050Right-handed alpha
Helix 107
AL8
C
2051 2053Right-handed 310
Helix 108
AL9
C
2065 2084Right-handed alpha
Helix 109
AM1
C
2088 2097Right-handed alpha
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There are 2 sheets in PDB entry 9HMS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1734 1740first strand
Strand 2
C
1724 1731anti-parallel
Strand 3
C
1708 1714anti-parallel
Strand 4
C
1894 1895parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1975 1979first strand
Strand 2
C
1948 1952parallel
Strand 3
C
1997 2001parallel
Strand 4
C
2023 2027parallel
Strand 5
C
2057 2059parallel
Strand 6
C
2111 2112anti-parallel
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