Analysis of interatomic Contacts of Structural Units in PDB entry:
9HMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HMX entry

There are 2 chains in PDB entry 9HMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 43SER 239
B
 LYS 41SER 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9HMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 121Right-handed alpha
Helix 2
AA2
A
138 151Right-handed alpha
Helix 3
AA3
A
151 238Right-handed alpha
Helix 4
AA4
B
43 77Right-handed alpha
Helix 5
AA5
B
95 109Right-handed alpha
Helix 6
AA6
B
120 125Right-handed alpha
Helix 7
AA7
B
128 137Right-handed alpha
Helix 8
AA8
B
153 167Right-handed alpha
Helix 9
AA9
B
178 192Right-handed alpha
Helix 10
AB1
B
218 221Right-handed 310
Helix 11
AB2
B
222 236Right-handed alpha
Helix 12
AB3
B
237 239Right-handed 310
Helix 13
AB4
B
255 263Right-handed alpha
Helix 14
AB5
B
263 270Right-handed alpha
Helix 15
AB6
B
278 294Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9HMX.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 198first strand
Strand 2
B
112 119anti-parallel
Strand 3
B
85 90parallel
Strand 4
B
208 212parallel
Strand 5
B
242 245parallel
Strand 6
B
271 273parallel
Strand 7
B
300 301parallel
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