Analysis of interatomic Contacts of Structural Units in PDB entry:
9HMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HMY entry

There is 1 chain in PDB entry 9HMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14TYR 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9HMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 33Right-handed alpha
Helix 2
AA2
A
47 57Right-handed alpha
Helix 3
AA3
A
76 84Right-handed alpha
Helix 4
AA4
A
95 100Right-handed alpha
Helix 5
AA5
A
127 166Right-handed alpha
Helix 6
AA6
A
190 198Right-handed alpha
Helix 7
AA7
A
198 206Right-handed alpha
Helix 8
AA8
A
214 223Right-handed alpha
Helix 9
AA9
A
237 242Right-handed alpha
Helix 10
AB1
A
259 267Right-handed alpha
Helix 11
AB2
A
278 290Right-handed alpha
Helix 12
AB3
A
303 309Right-handed alpha
Helix 13
AB4
A
310 313Right-handed 310
Helix 14
AB5
A
315 326Right-handed alpha
Helix 15
AB6
A
333 339Right-handed alpha
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There are 2 sheets in PDB entry 9HMY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
112 114anti-parallel
Strand 3
A
105 109anti-parallel
Strand 4
A
16 22anti-parallel
Strand 5
A
38 41parallel
Strand 6
A
61 64parallel
Strand 7
A
87 90parallel
Strand 8
A
124 125anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 274first strand
Strand 2
A
246 251parallel
Strand 3
A
228 230parallel
Strand 4
A
208 212parallel
Strand 5
A
181 185parallel
Strand 6
A
294 298parallel
Strand 7
A
330 332parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il