Analysis of interatomic Contacts of Structural Units in PDB entry:
9HMZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HMZ entry

There are 5 chains in PDB entry 9HMZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 12	THR 342
B	ASP 12	THR 342
C	ASP 12	THR 342
D	LEU 16	THR 342
E	LEU 16	SER 47

There are122 helices in PDB entry 9HMZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	33	Right-handed 310
Helix 2	AA2	A	47	58	Right-handed alpha
Helix 3	AA3	A	76	84	Right-handed alpha
Helix 4	AA4	A	93	99	Right-handed alpha
Helix 5	AA5	A	128	161	Right-handed alpha
Helix 6	AA6	A	161	168	Right-handed alpha
Helix 7	AA7	A	191	199	Right-handed alpha
Helix 8	AA8	A	199	207	Right-handed alpha
Helix 9	AA9	A	215	223	Right-handed alpha
Helix 10	AB1	A	233	237	Right-handed 310
Helix 11	AB2	A	238	243	Right-handed alpha
Helix 12	AB3	A	260	268	Right-handed alpha
Helix 13	AB4	A	280	292	Right-handed alpha
Helix 14	AB5	A	305	313	Right-handed alpha
Helix 15	AB6	A	317	328	Right-handed alpha
Helix 16	AB7	A	334	340	Right-handed alpha
Helix 17	AB8	B	47	58	Right-handed alpha
Helix 18	AB9	B	76	84	Right-handed alpha
Helix 19	AC1	B	93	100	Right-handed alpha
Helix 20	AC2	B	128	161	Right-handed alpha
Helix 21	AC3	B	161	168	Right-handed alpha
Helix 22	AC4	B	191	199	Right-handed alpha
Helix 23	AC5	B	199	207	Right-handed alpha
Helix 24	AC6	B	215	223	Right-handed alpha
Helix 25	AC7	B	233	237	Right-handed 310
Helix 26	AC8	B	238	243	Right-handed alpha
Helix 27	AC9	B	260	268	Right-handed alpha
Helix 28	AD1	B	280	292	Right-handed alpha
Helix 29	AD2	B	305	312	Right-handed alpha
Helix 30	AD3	B	317	328	Right-handed alpha
Helix 31	AD4	B	334	340	Right-handed alpha
Helix 32	AD5	C	29	33	Right-handed 310
Helix 33	AD6	C	47	57	Right-handed alpha
Helix 34	AD7	C	76	84	Right-handed alpha
Helix 35	AD8	C	94	100	Right-handed alpha
Helix 36	AD9	C	128	161	Right-handed alpha
Helix 37	AE1	C	161	168	Right-handed alpha
Helix 38	AE2	C	191	199	Right-handed alpha
Helix 39	AE3	C	199	207	Right-handed alpha
Helix 40	AE4	C	215	223	Right-handed alpha
Helix 41	AE5	C	233	237	Right-handed 310
Helix 42	AE6	C	238	243	Right-handed alpha
Helix 43	AE7	C	260	268	Right-handed alpha
Helix 44	AE8	C	280	292	Right-handed alpha
Helix 45	AE9	C	305	312	Right-handed alpha
Helix 46	AF1	C	317	328	Right-handed alpha
Helix 47	AF2	C	334	339	Right-handed alpha
Helix 48	AF3	D	47	58	Right-handed alpha
Helix 49	AF4	D	76	84	Right-handed alpha
Helix 50	AF5	D	93	99	Right-handed alpha
Helix 51	AF6	D	128	161	Right-handed alpha
Helix 52	AF7	D	161	168	Right-handed alpha
Helix 53	AF8	D	191	199	Right-handed alpha
Helix 54	AF9	D	199	207	Right-handed alpha
Helix 55	AG1	D	215	223	Right-handed alpha
Helix 56	AG2	D	233	237	Right-handed 310
Helix 57	AG3	D	238	243	Right-handed alpha
Helix 58	AG4	D	260	268	Right-handed alpha
Helix 59	AG5	D	280	292	Right-handed alpha
Helix 60	AG6	D	305	312	Right-handed alpha
Helix 61	AG7	D	317	328	Right-handed alpha
Helix 62	AG8	D	334	340	Right-handed alpha
Helix 63	AG9	E	47	58	Right-handed alpha
Helix 64	AH1	E	76	84	Right-handed alpha
Helix 65	AH2	E	93	99	Right-handed alpha
Helix 66	AH3	E	128	161	Right-handed alpha
Helix 67	AH4	E	161	168	Right-handed alpha
Helix 68	AH5	E	191	199	Right-handed alpha
Helix 69	AH6	E	199	207	Right-handed alpha
Helix 70	AH7	E	215	223	Right-handed alpha
Helix 71	AH8	E	233	237	Right-handed 310
Helix 72	AH9	E	238	243	Right-handed alpha
Helix 73	AI1	E	260	268	Right-handed alpha
Helix 74	AI2	E	280	292	Right-handed alpha
Helix 75	AI3	E	305	312	Right-handed alpha
Helix 76	AI4	E	317	328	Right-handed alpha
Helix 77	AI5	E	334	340	Right-handed alpha
Helix 78	AI6	F	47	56	Right-handed alpha
Helix 79	AI7	F	76	84	Right-handed alpha
Helix 80	AI8	F	93	99	Right-handed alpha
Helix 81	AI9	F	128	161	Right-handed alpha
Helix 82	AJ1	F	161	168	Right-handed alpha
Helix 83	AJ2	F	191	199	Right-handed alpha
Helix 84	AJ3	F	199	207	Right-handed alpha
Helix 85	AJ4	F	215	223	Right-handed alpha
Helix 86	AJ5	F	233	237	Right-handed 310
Helix 87	AJ6	F	238	243	Right-handed alpha
Helix 88	AJ7	F	260	268	Right-handed alpha
Helix 89	AJ8	F	280	292	Right-handed alpha
Helix 90	AJ9	F	305	313	Right-handed alpha
Helix 91	AK1	F	317	328	Right-handed alpha
Helix 92	AK2	F	334	339	Right-handed alpha
Helix 93	AK3	G	47	58	Right-handed alpha
Helix 94	AK4	G	76	84	Right-handed alpha
Helix 95	AK5	G	93	99	Right-handed alpha
Helix 96	AK6	G	128	161	Right-handed alpha
Helix 97	AK7	G	161	168	Right-handed alpha
Helix 98	AK8	G	174	179	Right-handed alpha
Helix 99	AK9	G	191	199	Right-handed alpha
Helix 100	AL1	G	199	207	Right-handed alpha
Helix 101	AL2	G	215	223	Right-handed alpha
Helix 102	AL3	G	233	237	Right-handed 310
Helix 103	AL4	G	238	243	Right-handed alpha
Helix 104	AL5	G	260	268	Right-handed alpha
Helix 105	AL6	G	280	292	Right-handed alpha
Helix 106	AL7	G	305	312	Right-handed alpha
Helix 107	AL8	G	317	328	Right-handed alpha
Helix 108	AL9	G	334	340	Right-handed alpha
Helix 109	AM1	H	47	58	Right-handed alpha
Helix 110	AM2	H	76	84	Right-handed alpha
Helix 111	AM3	H	94	99	Right-handed alpha
Helix 112	AM4	H	128	168	Right-handed alpha
Helix 113	AM5	H	191	199	Right-handed alpha
Helix 114	AM6	H	199	207	Right-handed alpha
Helix 115	AM7	H	215	223	Right-handed alpha
Helix 116	AM8	H	233	237	Right-handed 310
Helix 117	AM9	H	238	243	Right-handed alpha
Helix 118	AN1	H	260	268	Right-handed alpha
Helix 119	AN2	H	280	292	Right-handed alpha
Helix 120	AN3	H	305	312	Right-handed alpha
Helix 121	AN4	H	317	328	Right-handed alpha
Helix 122	AN5	H	334	340	Right-handed alpha

There are 16 sheets in PDB entry 9HMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	123	first strand
Strand 2	A	113	116	anti-parallel
Strand 3	A	104	108	anti-parallel
Strand 4	A	16	22	anti-parallel
Strand 5	A	38	41	parallel
Strand 6	A	61	64	parallel
Strand 7	A	87	90	parallel
Strand 8	A	125	127	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	275	first strand
Strand 2	A	247	252	parallel
Strand 3	A	229	231	parallel
Strand 4	A	209	213	parallel
Strand 5	A	182	186	parallel
Strand 6	A	296	300	parallel
Strand 7	A	331	333	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	123	first strand
Strand 2	B	113	115	anti-parallel
Strand 3	B	104	108	anti-parallel
Strand 4	B	16	22	anti-parallel
Strand 5	B	38	41	parallel
Strand 6	B	61	64	parallel
Strand 7	B	87	90	parallel
Strand 8	B	125	126	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	275	first strand
Strand 2	B	247	252	parallel
Strand 3	B	229	231	parallel
Strand 4	B	209	213	parallel
Strand 5	B	182	186	parallel
Strand 6	B	296	300	parallel
Strand 7	B	331	333	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	123	first strand
Strand 2	C	113	116	anti-parallel
Strand 3	C	105	108	anti-parallel
Strand 4	C	16	22	anti-parallel
Strand 5	C	38	41	parallel
Strand 6	C	61	64	parallel
Strand 7	C	87	90	parallel
Strand 8	C	125	126	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	275	first strand
Strand 2	C	247	252	parallel
Strand 3	C	229	231	parallel
Strand 4	C	209	213	parallel
Strand 5	C	182	186	parallel
Strand 6	C	296	300	parallel
Strand 7	C	331	333	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	113	116	anti-parallel
Strand 3	D	105	108	anti-parallel
Strand 4	D	17	23	anti-parallel
Strand 5	D	38	41	parallel
Strand 6	D	61	64	parallel
Strand 7	D	87	90	parallel
Strand 8	D	125	126	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	275	first strand
Strand 2	D	247	252	parallel
Strand 3	D	229	231	parallel
Strand 4	D	209	213	parallel
Strand 5	D	182	186	parallel
Strand 6	D	296	300	parallel
Strand 7	D	331	333	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	123	first strand
Strand 2	E	113	116	anti-parallel
Strand 3	E	105	108	anti-parallel
Strand 4	E	17	22	anti-parallel
Strand 5	E	38	41	parallel
Strand 6	E	61	64	parallel
Strand 7	E	87	90	parallel
Strand 8	E	125	126	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	275	first strand
Strand 2	E	247	252	parallel
Strand 3	E	229	231	parallel
Strand 4	E	209	213	parallel
Strand 5	E	182	186	parallel
Strand 6	E	296	300	parallel
Strand 7	E	331	333	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	123	first strand
Strand 2	F	113	116	anti-parallel
Strand 3	F	104	108	anti-parallel
Strand 4	F	16	22	anti-parallel
Strand 5	F	38	41	parallel
Strand 6	F	61	64	parallel
Strand 7	F	87	90	parallel
Strand 8	F	125	126	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	275	first strand
Strand 2	F	247	252	parallel
Strand 3	F	229	231	parallel
Strand 4	F	209	213	parallel
Strand 5	F	182	186	parallel
Strand 6	F	296	300	parallel
Strand 7	F	331	333	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	119	123	first strand
Strand 2	G	113	116	anti-parallel
Strand 3	G	105	108	anti-parallel
Strand 4	G	16	22	anti-parallel
Strand 5	G	38	41	parallel
Strand 6	G	61	64	parallel
Strand 7	G	87	90	parallel
Strand 8	G	125	126	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	275	first strand
Strand 2	G	247	252	parallel
Strand 3	G	229	231	parallel
Strand 4	G	209	213	parallel
Strand 5	G	182	186	parallel
Strand 6	G	296	300	parallel
Strand 7	G	331	333	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	119	123	first strand
Strand 2	H	113	116	anti-parallel
Strand 3	H	105	108	anti-parallel
Strand 4	H	17	22	anti-parallel
Strand 5	H	38	41	parallel
Strand 6	H	61	64	parallel
Strand 7	H	87	90	parallel
Strand 8	H	125	126	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	271	275	first strand
Strand 2	H	247	252	parallel
Strand 3	H	229	231	parallel
Strand 4	H	209	213	parallel
Strand 5	H	182	186	parallel
Strand 6	H	296	300	parallel
Strand 7	H	331	333	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HMZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HMZ