Analysis of interatomic Contacts of Structural Units in PDB entry:
9HN4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HN4 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 9HN4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 419GLU 453
A
 VAL 455PRO 471
B
 GLY 307ARG 2120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 9HN4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
308 328Right-handed alpha
Helix 2
AA2
B
332 351Right-handed alpha
Helix 3
AA3
B
357 380Right-handed alpha
Helix 4
AA4
B
380 386Right-handed alpha
Helix 5
AA5
B
386 415Right-handed alpha
Helix 6
AA6
B
419 442Right-handed alpha
Helix 7
AA7
B
446 470Right-handed alpha
Helix 8
AA8
B
472 490Right-handed alpha
Helix 9
AA9
B
499 517Right-handed alpha
Helix 10
AB1
B
519 534Right-handed alpha
Helix 11
AB2
B
538 560Right-handed alpha
Helix 12
AB3
B
562 567Right-handed alpha
Helix 13
AB4
B
568 574Right-handed alpha
Helix 14
AB5
B
577 595Right-handed alpha
Helix 15
AB6
B
599 614Right-handed alpha
Helix 16
AB7
B
618 637Right-handed alpha
Helix 17
AB8
B
641 646Right-handed alpha
Helix 18
AB9
B
648 663Right-handed alpha
Helix 19
AC1
B
669 704Right-handed alpha
Helix 20
AC2
B
730 734Right-handed 310
Helix 21
AC3
B
737 760Right-handed alpha
Helix 22
AC4
B
768 786Right-handed alpha
Helix 23
AC5
B
788 807Right-handed alpha
Helix 24
AC6
B
808 827Right-handed alpha
Helix 25
AC7
B
828 844Right-handed alpha
Helix 26
AC8
B
850 871Right-handed alpha
Helix 27
AC9
B
873 887Right-handed alpha
Helix 28
AD1
B
888 892Right-handed 310
Helix 29
AD2
B
894 913Right-handed alpha
Helix 30
AD3
B
920 929Right-handed alpha
Helix 31
AD4
B
934 955Right-handed alpha
Helix 32
AD5
B
974 1002Right-handed alpha
Helix 33
AD6
B
1003 1022Right-handed alpha
Helix 34
AD7
B
1023 1041Right-handed alpha
Helix 35
AD8
B
1043 1064Right-handed alpha
Helix 36
AD9
B
1148 1153Right-handed alpha
Helix 37
AE1
B
1153 1174Right-handed alpha
Helix 38
AE2
B
1179 1207Right-handed alpha
Helix 39
AE3
B
1219 1237Right-handed alpha
Helix 40
AE4
B
1240 1256Right-handed alpha
Helix 41
AE5
B
1261 1278Right-handed alpha
Helix 42
AE6
B
1288 1292Right-handed 310
Helix 43
AE7
B
1572 1589Right-handed alpha
Helix 44
AE8
B
1593 1609Right-handed alpha
Helix 45
AE9
B
1612 1622Right-handed alpha
Helix 46
AF1
B
1625 1647Right-handed alpha
Helix 47
AF2
B
1668 1678Right-handed alpha
Helix 48
AF3
B
1688 1701Right-handed alpha
Helix 49
AF4
B
1749 1769Right-handed alpha
Helix 50
AF5
B
1772 1797Right-handed alpha
Helix 51
AF6
B
1803 1807Right-handed 310
Helix 52
AF7
B
1813 1828Right-handed alpha
Helix 53
AF8
B
1835 1844Right-handed alpha
Helix 54
AF9
B
1845 1849Right-handed 310
Helix 55
AG1
B
1850 1862Right-handed alpha
Helix 56
AG2
B
1865 1881Right-handed alpha
Helix 57
AG3
B
1903 1907Right-handed 310
Helix 58
AG4
B
1920 1933Right-handed alpha
Helix 59
AG5
B
1936 1941Right-handed alpha
Helix 60
AG6
B
1959 1972Right-handed alpha
Helix 61
AG7
B
1984 1994Right-handed alpha
Helix 62
AG8
B
2011 2017Right-handed alpha
Helix 63
AG9
B
2044 2052Right-handed alpha
Helix 64
AH1
B
2066 2082Right-handed alpha
Helix 65
AH2
B
2088 2097Right-handed alpha
Helix 66
AH3
B
2102 2107Right-handed alpha
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There are 2 sheets in PDB entry 9HN4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1734 1742first strand
Strand 2
B
1724 1731anti-parallel
Strand 3
B
1706 1714anti-parallel
Strand 4
B
1890 1895parallel
Strand 5
B
1915 1917parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1975 1979first strand
Strand 2
B
1948 1952parallel
Strand 3
B
1997 2001parallel
Strand 4
B
2023 2026parallel
Strand 5
B
2056 2060parallel
Strand 6
B
2110 2114anti-parallel
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