Analysis of interatomic Contacts of Structural Units in PDB entry:
9HN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HN5 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 9HN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 165GLY 174
B
 ALA 176VAL 184
B
 THR 186GLU 212
A
 SER 244ARG 2120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 71 helices in PDB entry 9HN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
246 263Right-handed alpha
Helix 2
AA2
A
267 282Right-handed alpha
Helix 3
AA3
A
286 304Right-handed alpha
Helix 4
AA4
A
307 328Right-handed alpha
Helix 5
AA5
A
332 351Right-handed alpha
Helix 6
AA6
A
356 380Right-handed alpha
Helix 7
AA7
A
380 386Right-handed alpha
Helix 8
AA8
A
386 414Right-handed alpha
Helix 9
AA9
A
420 442Right-handed alpha
Helix 10
AB1
A
446 470Right-handed alpha
Helix 11
AB2
A
472 490Right-handed alpha
Helix 12
AB3
A
499 517Right-handed alpha
Helix 13
AB4
A
520 534Right-handed alpha
Helix 14
AB5
A
538 559Right-handed alpha
Helix 15
AB6
A
562 567Right-handed alpha
Helix 16
AB7
A
577 595Right-handed alpha
Helix 17
AB8
A
599 614Right-handed alpha
Helix 18
AB9
A
618 639Right-handed alpha
Helix 19
AC1
A
641 646Right-handed alpha
Helix 20
AC2
A
648 662Right-handed alpha
Helix 21
AC3
A
669 703Right-handed alpha
Helix 22
AC4
A
729 734Right-handed alpha
Helix 23
AC5
A
736 760Right-handed alpha
Helix 24
AC6
A
768 786Right-handed alpha
Helix 25
AC7
A
788 807Right-handed alpha
Helix 26
AC8
A
808 827Right-handed alpha
Helix 27
AC9
A
828 844Right-handed alpha
Helix 28
AD1
A
850 871Right-handed alpha
Helix 29
AD2
A
873 887Right-handed alpha
Helix 30
AD3
A
888 892Right-handed 310
Helix 31
AD4
A
894 913Right-handed alpha
Helix 32
AD5
A
915 919Right-handed 310
Helix 33
AD6
A
920 929Right-handed alpha
Helix 34
AD7
A
934 954Right-handed alpha
Helix 35
AD8
A
955 959Right-handed 310
Helix 36
AD9
A
974 1002Right-handed alpha
Helix 37
AE1
A
1003 1022Right-handed alpha
Helix 38
AE2
A
1023 1041Right-handed alpha
Helix 39
AE3
A
1043 1062Right-handed alpha
Helix 40
AE4
A
1138 1142Right-handed 310
Helix 41
AE5
A
1148 1153Right-handed alpha
Helix 42
AE6
A
1153 1174Right-handed alpha
Helix 43
AE7
A
1176 1207Right-handed alpha
Helix 44
AE8
A
1219 1237Right-handed alpha
Helix 45
AE9
A
1242 1257Right-handed alpha
Helix 46
AF1
A
1261 1278Right-handed alpha
Helix 47
AF2
A
1286 1292Right-handed 310
Helix 48
AF3
A
1572 1589Right-handed alpha
Helix 49
AF4
A
1593 1609Right-handed alpha
Helix 50
AF5
A
1612 1623Right-handed alpha
Helix 51
AF6
A
1625 1646Right-handed alpha
Helix 52
AF7
A
1668 1678Right-handed alpha
Helix 53
AF8
A
1688 1700Right-handed alpha
Helix 54
AF9
A
1749 1768Right-handed alpha
Helix 55
AG1
A
1772 1798Right-handed alpha
Helix 56
AG2
A
1799 1807Right-handed 310
Helix 57
AG3
A
1813 1830Right-handed alpha
Helix 58
AG4
A
1835 1845Right-handed alpha
Helix 59
AG5
A
1846 1849Right-handed 310
Helix 60
AG6
A
1850 1862Right-handed alpha
Helix 61
AG7
A
1865 1880Right-handed alpha
Helix 62
AG8
A
1903 1911Right-handed 310
Helix 63
AG9
A
1920 1933Right-handed alpha
Helix 64
AH1
A
1936 1941Right-handed alpha
Helix 65
AH2
A
1958 1971Right-handed alpha
Helix 66
AH3
A
1984 1995Right-handed alpha
Helix 67
AH4
A
2011 2017Right-handed alpha
Helix 68
AH5
A
2044 2052Right-handed alpha
Helix 69
AH6
A
2065 2084Right-handed alpha
Helix 70
AH7
A
2088 2096Right-handed alpha
Helix 71
AH8
A
2097 2099Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 9HN5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1737 1742first strand
Strand 2
A
1724 1730anti-parallel
Strand 3
A
1706 1714anti-parallel
Strand 4
A
1890 1894parallel
Strand 5
A
1915 1917parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1975 1979first strand
Strand 2
A
1948 1952parallel
Strand 3
A
1997 2001parallel
Strand 4
A
2023 2026parallel
Strand 5
A
2056 2060parallel
Strand 6
A
2110 2114anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il