Analysis of interatomic Contacts of Structural Units in PDB entry:
9HN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HN8 entry

There are 2 chains in PDB entry 9HN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0VAL 627
B
 GLY 0VAL 627
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 9HN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed 310
Helix 2
AA2
A
15 33Right-handed alpha
Helix 3
AA3
A
41 55Right-handed alpha
Helix 4
AA4
A
72 81Right-handed alpha
Helix 5
AA5
A
116 131Right-handed alpha
Helix 6
AA6
A
145 148Right-handed 310
Helix 7
AA7
A
149 161Right-handed alpha
Helix 8
AA8
A
237 242Right-handed alpha
Helix 9
AA9
A
254 266Right-handed alpha
Helix 10
AB1
A
316 330Right-handed alpha
Helix 11
AB2
A
347 354Right-handed alpha
Helix 12
AB3
A
364 378Right-handed alpha
Helix 13
AB4
A
387 393Right-handed 310
Helix 14
AB5
A
394 401Right-handed alpha
Helix 15
AB6
A
430 437Right-handed alpha
Helix 16
AB7
A
448 461Right-handed alpha
Helix 17
AB8
A
511 525Right-handed alpha
Helix 18
AB9
A
541 549Right-handed alpha
Helix 19
AC1
A
565 576Right-handed alpha
Helix 20
AC2
A
608 622Right-handed alpha
Helix 21
AC3
B
1 5Right-handed 310
Helix 22
AC4
B
7 12Right-handed alpha
Helix 23
AC5
B
15 34Right-handed alpha
Helix 24
AC6
B
47 58Right-handed alpha
Helix 25
AC7
B
72 79Right-handed alpha
Helix 26
AC8
B
116 132Right-handed alpha
Helix 27
AC9
B
149 160Right-handed alpha
Helix 28
AD1
B
237 242Right-handed alpha
Helix 29
AD2
B
254 267Right-handed alpha
Helix 30
AD3
B
315 329Right-handed alpha
Helix 31
AD4
B
347 354Right-handed alpha
Helix 32
AD5
B
364 378Right-handed alpha
Helix 33
AD6
B
389 391Right-handed 310
Helix 34
AD7
B
394 402Right-handed alpha
Helix 35
AD8
B
430 435Right-handed alpha
Helix 36
AD9
B
448 461Right-handed alpha
Helix 37
AE1
B
511 525Right-handed alpha
Helix 38
AE2
B
541 549Right-handed alpha
Helix 39
AE3
B
565 577Right-handed alpha
Helix 40
AE4
B
608 622Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 9HN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
138 143parallel
Strand 3
A
166 172parallel
Strand 4
A
272 277parallel
Strand 5
A
245 251parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
334 338parallel
Strand 3
A
381 385parallel
Strand 4
A
410 413parallel
Strand 5
A
467 470parallel
Strand 6
A
442 444parallel
Strand 7
A
536 538anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
489 493anti-parallel
Strand 3
A
529 534anti-parallel
Strand 4
A
503 507parallel
Strand 5
A
553 561parallel
Strand 6
A
583 588parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
138 143parallel
Strand 3
B
166 172parallel
Strand 4
B
272 277parallel
Strand 5
B
245 246parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
138 143parallel
Strand 3
B
166 172parallel
Strand 4
B
272 277parallel
Strand 5
B
250 251parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 360first strand
Strand 2
B
334 338parallel
Strand 3
B
381 387parallel
Strand 4
B
410 414parallel
Strand 5
B
467 470parallel
Strand 6
B
442 444parallel
Strand 7
B
536 538anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 486first strand
Strand 2
B
489 493anti-parallel
Strand 3
B
529 533anti-parallel
Strand 4
B
503 507parallel
Strand 5
B
553 561parallel
Strand 6
B
583 588parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il