Analysis of interatomic Contacts of Structural Units in PDB entry:
9HNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HNF entry

There are 2 chains in PDB entry 9HNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PHE 310
B
 LEU 3PHE 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9HNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 23Right-handed 310
Helix 2
AA2
A
29 44Right-handed alpha
Helix 3
AA3
A
63 78Right-handed alpha
Helix 4
AA4
A
93 98Right-handed alpha
Helix 5
AA5
A
98 105Right-handed alpha
Helix 6
AA6
A
121 128Right-handed alpha
Helix 7
AA7
A
129 131Right-handed 310
Helix 8
AA8
A
133 142Right-handed alpha
Helix 9
AA9
A
150 163Right-handed alpha
Helix 10
AB1
A
174 187Right-handed alpha
Helix 11
AB2
A
209 225Right-handed alpha
Helix 12
AB3
A
238 249Right-handed alpha
Helix 13
AB4
A
271 286Right-handed alpha
Helix 14
AB5
A
292 301Right-handed alpha
Helix 15
AB6
B
19 23Right-handed 310
Helix 16
AB7
B
29 44Right-handed alpha
Helix 17
AB8
B
64 66Right-handed 310
Helix 18
AB9
B
67 78Right-handed alpha
Helix 19
AC1
B
98 105Right-handed alpha
Helix 20
AC2
B
122 128Right-handed alpha
Helix 21
AC3
B
129 131Right-handed 310
Helix 22
AC4
B
133 142Right-handed alpha
Helix 23
AC5
B
150 163Right-handed alpha
Helix 24
AC6
B
174 188Right-handed alpha
Helix 25
AC7
B
209 225Right-handed alpha
Helix 26
AC8
B
238 249Right-handed alpha
Helix 27
AC9
B
271 286Right-handed alpha
Helix 28
AD1
B
292 301Right-handed alpha
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There are 7 sheets in PDB entry 9HNF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
289 290parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
47 50parallel
Strand 3
A
81 84parallel
Strand 4
A
108 112parallel
Strand 5
A
167 172parallel
Strand 6
A
194 200parallel
Strand 7
A
228 234parallel
Strand 8
A
252 255parallel
Strand 9
A
9 12parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
146 147anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
267 268anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
289 290parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
47 50parallel
Strand 3
B
81 84parallel
Strand 4
B
108 112parallel
Strand 5
B
167 172parallel
Strand 6
B
194 200parallel
Strand 7
B
228 234parallel
Strand 8
B
252 255parallel
Strand 9
B
9 12parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
146 147anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il