Analysis of interatomic Contacts of Structural Units in PDB entry:
9HNS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HNS entry

There are 6 chains in PDB entry 9HNS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 8	ARG 352
B	PRO 6	SER 584
C	PRO 6	SER 584
D	ASN 11	ARG 352
E	PRO 6	SER 584
P	GLN 1	VAL 510

There are 65 helices in PDB entry 9HNS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	26	Right-handed alpha
Helix 2	AA2	A	75	78	Right-handed 310
Helix 3	AA3	A	89	95	Right-handed 310
Helix 4	AA4	A	147	150	Right-handed 310
Helix 5	AA5	A	176	179	Right-handed 310
Helix 6	AA6	A	185	188	Right-handed 310
Helix 7	AA7	A	225	232	Right-handed alpha
Helix 8	AA8	A	232	245	Right-handed alpha
Helix 9	AA9	A	246	249	Right-handed 310
Helix 10	AB1	A	253	275	Right-handed alpha
Helix 11	AB2	A	276	278	Right-handed 310
Helix 12	AB3	A	286	316	Right-handed alpha
Helix 13	AB4	A	323	351	Right-handed alpha
Helix 14	AB5	B	7	21	Right-handed alpha
Helix 15	AB6	B	70	73	Right-handed 310
Helix 16	AB7	B	84	91	Right-handed 310
Helix 17	AB8	B	139	143	Right-handed 310
Helix 18	AB9	B	170	173	Right-handed 310
Helix 19	AC1	B	177	181	Right-handed 310
Helix 20	AC2	B	218	225	Right-handed alpha
Helix 21	AC3	B	225	237	Right-handed alpha
Helix 22	AC4	B	237	242	Right-handed alpha
Helix 23	AC5	B	246	269	Right-handed alpha
Helix 24	AC6	B	270	272	Right-handed 310
Helix 25	AC7	B	279	309	Right-handed alpha
Helix 26	AC8	B	552	582	Right-handed alpha
Helix 27	AC9	C	8	21	Right-handed alpha
Helix 28	AD1	C	70	73	Right-handed 310
Helix 29	AD2	C	84	91	Right-handed 310
Helix 30	AD3	C	139	145	Right-handed 310
Helix 31	AD4	C	170	173	Right-handed 310
Helix 32	AD5	C	177	181	Right-handed 310
Helix 33	AD6	C	218	225	Right-handed alpha
Helix 34	AD7	C	225	237	Right-handed alpha
Helix 35	AD8	C	237	242	Right-handed alpha
Helix 36	AD9	C	246	269	Right-handed alpha
Helix 37	AE1	C	279	308	Right-handed alpha
Helix 38	AE2	C	550	584	Right-handed alpha
Helix 39	AE3	D	12	26	Right-handed alpha
Helix 40	AE4	D	75	78	Right-handed 310
Helix 41	AE5	D	89	96	Right-handed 310
Helix 42	AE6	D	147	150	Right-handed 310
Helix 43	AE7	D	177	179	Right-handed 310
Helix 44	AE8	D	185	188	Right-handed 310
Helix 45	AE9	D	225	232	Right-handed alpha
Helix 46	AF1	D	232	245	Right-handed alpha
Helix 47	AF2	D	246	249	Right-handed 310
Helix 48	AF3	D	253	278	Right-handed alpha
Helix 49	AF4	D	286	315	Right-handed alpha
Helix 50	AF5	D	324	350	Right-handed alpha
Helix 51	AF6	E	8	21	Right-handed alpha
Helix 52	AF7	E	70	73	Right-handed 310
Helix 53	AF8	E	84	91	Right-handed 310
Helix 54	AF9	E	139	143	Right-handed 310
Helix 55	AG1	E	170	173	Right-handed 310
Helix 56	AG2	E	218	225	Right-handed alpha
Helix 57	AG3	E	225	238	Right-handed alpha
Helix 58	AG4	E	239	241	Right-handed 310
Helix 59	AG5	E	246	270	Right-handed alpha
Helix 60	AG6	E	279	307	Right-handed alpha
Helix 61	AG7	E	553	582	Right-handed alpha
Helix 62	AG8	P	415	418	Right-handed 310
Helix 63	AG9	P	449	452	Right-handed 310
Helix 64	AH1	P	474	478	Right-handed 310
Helix 65	AH2	P	495	497	Right-handed 310

There are 18 sheets in PDB entry 9HNS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	88	first strand
Strand 2	A	119	124	anti-parallel
Strand 3	A	128	140	anti-parallel
Strand 4	A	61	73	anti-parallel
Strand 5	A	41	56	anti-parallel
Strand 6	A	169	173	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	111	first strand
Strand 2	A	128	140	anti-parallel
Strand 3	A	61	73	anti-parallel
Strand 4	A	41	56	anti-parallel
Strand 5	A	181	183	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	152	160	anti-parallel
Strand 3	A	210	223	anti-parallel
Strand 4	A	193	207	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	123	135	anti-parallel
Strand 4	B	56	68	anti-parallel
Strand 5	B	36	51	anti-parallel
Strand 6	B	164	168	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	123	135	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	36	51	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	203	216	anti-parallel
Strand 4	B	186	200	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	123	135	anti-parallel
Strand 4	C	56	68	anti-parallel
Strand 5	C	36	51	anti-parallel
Strand 6	C	164	168	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	106	first strand
Strand 2	C	123	135	anti-parallel
Strand 3	C	56	68	anti-parallel
Strand 4	C	36	51	anti-parallel
Strand 5	C	175	176	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	147	156	anti-parallel
Strand 3	C	203	216	anti-parallel
Strand 4	C	186	200	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	88	first strand
Strand 2	D	119	124	anti-parallel
Strand 3	D	128	140	anti-parallel
Strand 4	D	61	73	anti-parallel
Strand 5	D	41	56	anti-parallel
Strand 6	D	169	173	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	111	first strand
Strand 2	D	128	140	anti-parallel
Strand 3	D	61	73	anti-parallel
Strand 4	D	41	56	anti-parallel
Strand 5	D	181	183	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	103	first strand
Strand 2	D	152	161	anti-parallel
Strand 3	D	210	223	anti-parallel
Strand 4	D	193	207	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	83	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	123	135	anti-parallel
Strand 4	E	56	68	anti-parallel
Strand 5	E	36	51	anti-parallel
Strand 6	E	164	168	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	106	first strand
Strand 2	E	123	135	anti-parallel
Strand 3	E	56	68	anti-parallel
Strand 4	E	36	51	anti-parallel
Strand 5	E	175	176	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	147	156	anti-parallel
Strand 3	E	203	216	anti-parallel
Strand 4	E	186	200	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	2	7	first strand
Strand 2	P	404	413	anti-parallel
Strand 3	P	465	471	anti-parallel
Strand 4	P	455	460	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	445	447	first strand
Strand 2	P	433	439	anti-parallel
Strand 3	P	420	426	anti-parallel
Strand 4	P	479	486	anti-parallel
Strand 5	P	499	502	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	445	447	first strand
Strand 2	P	433	439	anti-parallel
Strand 3	P	420	426	anti-parallel
Strand 4	P	479	486	anti-parallel
Strand 5	P	506	508	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HNS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HNS