Analysis of interatomic Contacts of Structural Units in PDB entry:
9HNT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HNT entry

There are 6 chains in PDB entry 9HNT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 8	ARG 352
B	PRO 6	SER 584
C	PRO 6	SER 584
D	ASN 11	ARG 352
E	PRO 6	SER 584
P	GLN 1	VAL 510

There are 60 helices in PDB entry 9HNT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	25	Right-handed alpha
Helix 2	AA2	A	75	78	Right-handed 310
Helix 3	AA3	A	89	95	Right-handed 310
Helix 4	AA4	A	147	150	Right-handed 310
Helix 5	AA5	A	225	232	Right-handed alpha
Helix 6	AA6	A	232	244	Right-handed alpha
Helix 7	AA7	A	245	249	Right-handed 310
Helix 8	AA8	A	253	276	Right-handed alpha
Helix 9	AA9	A	277	279	Right-handed 310
Helix 10	AB1	A	286	316	Right-handed alpha
Helix 11	AB2	A	325	352	Right-handed alpha
Helix 12	AB3	B	9	21	Right-handed alpha
Helix 13	AB4	B	70	73	Right-handed 310
Helix 14	AB5	B	84	91	Right-handed 310
Helix 15	AB6	B	139	143	Right-handed 310
Helix 16	AB7	B	170	173	Right-handed 310
Helix 17	AB8	B	177	181	Right-handed 310
Helix 18	AB9	B	218	225	Right-handed alpha
Helix 19	AC1	B	225	238	Right-handed alpha
Helix 20	AC2	B	239	241	Right-handed 310
Helix 21	AC3	B	246	270	Right-handed alpha
Helix 22	AC4	B	279	308	Right-handed alpha
Helix 23	AC5	B	550	583	Right-handed alpha
Helix 24	AC6	C	8	21	Right-handed alpha
Helix 25	AC7	C	70	73	Right-handed 310
Helix 26	AC8	C	84	90	Right-handed 310
Helix 27	AC9	C	139	145	Right-handed 310
Helix 28	AD1	C	170	173	Right-handed 310
Helix 29	AD2	C	177	181	Right-handed 310
Helix 30	AD3	C	218	225	Right-handed alpha
Helix 31	AD4	C	225	237	Right-handed alpha
Helix 32	AD5	C	238	242	Right-handed 310
Helix 33	AD6	C	246	270	Right-handed alpha
Helix 34	AD7	C	279	308	Right-handed alpha
Helix 35	AD8	C	551	584	Right-handed alpha
Helix 36	AD9	D	12	26	Right-handed alpha
Helix 37	AE1	D	75	78	Right-handed 310
Helix 38	AE2	D	89	93	Right-handed 310
Helix 39	AE3	D	147	150	Right-handed 310
Helix 40	AE4	D	177	179	Right-handed 310
Helix 41	AE5	D	225	232	Right-handed alpha
Helix 42	AE6	D	232	245	Right-handed alpha
Helix 43	AE7	D	246	249	Right-handed 310
Helix 44	AE8	D	253	276	Right-handed alpha
Helix 45	AE9	D	288	314	Right-handed alpha
Helix 46	AF1	D	324	351	Right-handed alpha
Helix 47	AF2	E	7	21	Right-handed alpha
Helix 48	AF3	E	70	73	Right-handed 310
Helix 49	AF4	E	84	90	Right-handed 310
Helix 50	AF5	E	139	143	Right-handed 310
Helix 51	AF6	E	170	173	Right-handed 310
Helix 52	AF7	E	218	225	Right-handed alpha
Helix 53	AF8	E	225	237	Right-handed alpha
Helix 54	AF9	E	238	241	Right-handed 310
Helix 55	AG1	E	246	270	Right-handed alpha
Helix 56	AG2	E	279	307	Right-handed alpha
Helix 57	AG3	E	555	582	Right-handed alpha
Helix 58	AG4	P	414	418	Right-handed 310
Helix 59	AG5	P	474	478	Right-handed 310
Helix 60	AG6	P	495	497	Right-handed 310

There are 19 sheets in PDB entry 9HNT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	119	124	anti-parallel
Strand 3	A	128	140	anti-parallel
Strand 4	A	61	73	anti-parallel
Strand 5	A	41	56	anti-parallel
Strand 6	A	169	173	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	111	first strand
Strand 2	A	128	140	anti-parallel
Strand 3	A	61	73	anti-parallel
Strand 4	A	41	56	anti-parallel
Strand 5	A	181	183	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	152	161	anti-parallel
Strand 3	A	210	223	anti-parallel
Strand 4	A	193	207	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	123	135	anti-parallel
Strand 4	B	56	68	anti-parallel
Strand 5	B	36	51	anti-parallel
Strand 6	B	164	168	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	123	135	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	36	51	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	203	216	anti-parallel
Strand 4	B	186	200	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	123	135	anti-parallel
Strand 4	C	56	68	anti-parallel
Strand 5	C	36	51	anti-parallel
Strand 6	C	164	168	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	106	first strand
Strand 2	C	123	135	anti-parallel
Strand 3	C	56	68	anti-parallel
Strand 4	C	36	51	anti-parallel
Strand 5	C	175	176	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	147	156	anti-parallel
Strand 3	C	204	216	anti-parallel
Strand 4	C	186	188	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	147	156	anti-parallel
Strand 3	C	204	216	anti-parallel
Strand 4	C	192	199	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	88	first strand
Strand 2	D	119	124	anti-parallel
Strand 3	D	128	140	anti-parallel
Strand 4	D	61	73	anti-parallel
Strand 5	D	41	55	anti-parallel
Strand 6	D	169	173	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	111	first strand
Strand 2	D	128	140	anti-parallel
Strand 3	D	61	73	anti-parallel
Strand 4	D	41	55	anti-parallel
Strand 5	D	181	183	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	152	160	anti-parallel
Strand 3	D	210	223	anti-parallel
Strand 4	D	193	207	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	83	first strand
Strand 2	E	114	117	anti-parallel
Strand 3	E	123	135	anti-parallel
Strand 4	E	56	68	anti-parallel
Strand 5	E	36	51	anti-parallel
Strand 6	E	164	168	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	106	first strand
Strand 2	E	123	135	anti-parallel
Strand 3	E	56	68	anti-parallel
Strand 4	E	36	51	anti-parallel
Strand 5	E	175	176	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	151	156	anti-parallel
Strand 3	E	203	216	anti-parallel
Strand 4	E	147	148	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	151	156	anti-parallel
Strand 3	E	203	216	anti-parallel
Strand 4	E	186	200	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	7	first strand
Strand 2	P	405	412	anti-parallel
Strand 3	P	465	470	anti-parallel
Strand 4	P	455	460	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	446	447	first strand
Strand 2	P	433	439	anti-parallel
Strand 3	P	420	425	anti-parallel
Strand 4	P	483	486	anti-parallel
Strand 5	P	499	502	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HNT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HNT