Analysis of interatomic Contacts of Structural Units in PDB entry:
9HNW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HNW entry

There are 5 chains in PDB entry 9HNW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 70	LEU 785
B	GLY 11	TYR 672
C	MET 1	GLY 75
D	MET 1	GLN 62
D	GLU 64	GLY 76

There are 28 helices in PDB entry 9HNW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	101	Right-handed alpha
Helix 2	AA2	A	104	128	Right-handed alpha
Helix 3	AA3	A	136	166	Right-handed alpha
Helix 4	AA4	A	167	171	Right-handed 310
Helix 5	AA5	A	178	189	Right-handed alpha
Helix 6	AA6	A	190	193	Right-handed 310
Helix 7	AA7	A	200	227	Right-handed alpha
Helix 8	AA8	A	424	430	Right-handed alpha
Helix 9	AA9	A	484	494	Right-handed alpha
Helix 10	AB1	A	563	568	Right-handed 310
Helix 11	AB2	A	740	744	Right-handed 310
Helix 12	AB3	A	759	768	Right-handed alpha
Helix 13	AB4	B	146	150	Right-handed alpha
Helix 14	AB5	B	328	334	Right-handed alpha
Helix 15	AB6	B	402	410	Right-handed alpha
Helix 16	AB7	B	445	449	Right-handed alpha
Helix 17	AB8	B	462	471	Right-handed alpha
Helix 18	AB9	B	474	478	Right-handed 310
Helix 19	AC1	B	531	535	Right-handed 310
Helix 20	AC2	B	536	546	Right-handed alpha
Helix 21	AC3	B	547	555	Right-handed alpha
Helix 22	AC4	B	592	604	Right-handed alpha
Helix 23	AC5	B	631	639	Right-handed alpha
Helix 24	AC6	B	653	661	Right-handed alpha
Helix 25	AC7	C	22	35	Right-handed alpha
Helix 26	AC8	C	56	60	Right-handed 310
Helix 27	AC9	D	22	35	Right-handed alpha
Helix 28	AD1	D	37	39	Right-handed 310

There are 19 sheets in PDB entry 9HNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	C	74	75	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	453	first strand
Strand 2	A	432	440	anti-parallel
Strand 3	A	515	521	anti-parallel
Strand 4	A	496	498	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	459	first strand
Strand 2	A	527	533	parallel
Strand 3	A	776	784	anti-parallel
Strand 4	A	576	584	anti-parallel
Strand 5	A	561	562	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	459	first strand
Strand 2	A	527	533	parallel
Strand 3	A	776	784	anti-parallel
Strand 4	A	576	584	anti-parallel
Strand 5	A	594	600	anti-parallel
Strand 6	A	746	751	anti-parallel
Strand 7	A	754	758	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	506	first strand
Strand 2	A	511	513	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	550	551	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	423	first strand
Strand 2	B	429	433	anti-parallel
Strand 3	B	15	21	anti-parallel
Strand 4	B	514	519	anti-parallel
Strand 5	B	524	529	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	39	first strand
Strand 2	B	44	49	anti-parallel
Strand 3	B	54	58	anti-parallel
Strand 4	B	67	71	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	84	first strand
Strand 2	B	89	94	anti-parallel
Strand 3	B	98	103	anti-parallel
Strand 4	B	108	113	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	B	131	135	anti-parallel
Strand 3	B	141	145	anti-parallel
Strand 4	B	163	164	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	176	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	192	195	anti-parallel
Strand 4	B	202	206	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	218	first strand
Strand 2	B	224	229	anti-parallel
Strand 3	B	234	238	anti-parallel
Strand 4	B	243	248	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	260	first strand
Strand 2	B	266	271	anti-parallel
Strand 3	B	275	280	anti-parallel
Strand 4	B	287	292	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	302	first strand
Strand 2	B	311	316	anti-parallel
Strand 3	B	321	325	anti-parallel
Strand 4	B	355	357	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	368	first strand
Strand 2	B	374	378	anti-parallel
Strand 3	B	384	388	anti-parallel
Strand 4	B	396	399	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	459	461	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	588	first strand
Strand 2	B	564	571	anti-parallel
Strand 3	B	668	672	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	66	70	parallel
Strand 4	C	42	45	anti-parallel
Strand 5	C	48	49	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	66	71	parallel
Strand 4	D	41	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HNW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HNW