Analysis of interatomic Contacts of Structural Units in PDB entry:
9HPB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HPB entry

There are 6 chains in PDB entry 9HPB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 242
B	MET 1	PRO 242
D	ALA 2	PRO 242
F	ALA 2	PRO 242
C	PRO 0	PRO 242
E	MET 1	PRO 242

There are 64 helices in PDB entry 9HPB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	32	Right-handed alpha
Helix 2	AA2	A	44	53	Right-handed alpha
Helix 3	AA3	A	55	60	Right-handed alpha
Helix 4	AA4	A	65	68	Right-handed 310
Helix 5	AA5	A	82	88	Right-handed alpha
Helix 6	AA6	A	88	106	Right-handed alpha
Helix 7	AA7	A	133	148	Right-handed alpha
Helix 8	AA8	A	148	161	Right-handed alpha
Helix 9	AA9	A	184	196	Right-handed 310
Helix 10	AB1	A	213	219	Right-handed alpha
Helix 11	AB2	A	229	241	Right-handed alpha
Helix 12	AB3	B	21	32	Right-handed alpha
Helix 13	AB4	B	44	52	Right-handed alpha
Helix 14	AB5	B	65	68	Right-handed 310
Helix 15	AB6	B	82	88	Right-handed alpha
Helix 16	AB7	B	88	105	Right-handed alpha
Helix 17	AB8	B	133	148	Right-handed alpha
Helix 18	AB9	B	148	161	Right-handed alpha
Helix 19	AC1	B	184	193	Right-handed 310
Helix 20	AC2	B	213	218	Right-handed alpha
Helix 21	AC3	B	229	241	Right-handed alpha
Helix 22	AC4	D	21	32	Right-handed alpha
Helix 23	AC5	D	44	53	Right-handed alpha
Helix 24	AC6	D	55	60	Right-handed alpha
Helix 25	AC7	D	65	68	Right-handed 310
Helix 26	AC8	D	82	88	Right-handed alpha
Helix 27	AC9	D	88	105	Right-handed alpha
Helix 28	AD1	D	133	148	Right-handed alpha
Helix 29	AD2	D	148	161	Right-handed alpha
Helix 30	AD3	D	184	193	Right-handed 310
Helix 31	AD4	D	213	219	Right-handed alpha
Helix 32	AD5	D	229	241	Right-handed alpha
Helix 33	AD6	F	21	35	Right-handed alpha
Helix 34	AD7	F	44	51	Right-handed alpha
Helix 35	AD8	F	55	60	Right-handed alpha
Helix 36	AD9	F	67	69	Right-handed 310
Helix 37	AE1	F	82	87	Right-handed alpha
Helix 38	AE2	F	88	106	Right-handed alpha
Helix 39	AE3	F	133	148	Right-handed alpha
Helix 40	AE4	F	148	161	Right-handed alpha
Helix 41	AE5	F	184	193	Right-handed 310
Helix 42	AE6	F	213	219	Right-handed alpha
Helix 43	AE7	F	229	241	Right-handed alpha
Helix 44	AE8	C	21	32	Right-handed alpha
Helix 45	AE9	C	44	53	Right-handed alpha
Helix 46	AF1	C	55	60	Right-handed alpha
Helix 47	AF2	C	65	69	Right-handed 310
Helix 48	AF3	C	83	106	Right-handed alpha
Helix 49	AF4	C	133	148	Right-handed alpha
Helix 50	AF5	C	148	161	Right-handed alpha
Helix 51	AF6	C	184	192	Right-handed 310
Helix 52	AF7	C	213	218	Right-handed alpha
Helix 53	AF8	C	229	241	Right-handed alpha
Helix 54	AF9	E	21	35	Right-handed alpha
Helix 55	AG1	E	44	53	Right-handed alpha
Helix 56	AG2	E	55	59	Right-handed 310
Helix 57	AG3	E	65	68	Right-handed 310
Helix 58	AG4	E	82	88	Right-handed alpha
Helix 59	AG5	E	88	106	Right-handed alpha
Helix 60	AG6	E	133	148	Right-handed alpha
Helix 61	AG7	E	148	161	Right-handed alpha
Helix 62	AG8	E	184	196	Right-handed 310
Helix 63	AG9	E	213	219	Right-handed alpha
Helix 64	AH1	E	229	241	Right-handed alpha

There are 12 sheets in PDB entry 9HPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	A	70	73	anti-parallel
Strand 3	A	62	64	anti-parallel
Strand 4	A	36	40	parallel
Strand 5	A	3	8	parallel
Strand 6	A	199	204	parallel
Strand 7	A	223	226	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	122	125	anti-parallel
Strand 3	A	175	180	anti-parallel
Strand 4	A	166	171	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	70	73	anti-parallel
Strand 3	B	62	64	anti-parallel
Strand 4	B	36	40	parallel
Strand 5	B	3	8	parallel
Strand 6	B	199	204	parallel
Strand 7	B	223	226	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	123	125	anti-parallel
Strand 3	B	175	180	anti-parallel
Strand 4	B	166	171	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	80	first strand
Strand 2	D	70	73	anti-parallel
Strand 3	D	62	64	anti-parallel
Strand 4	D	36	40	parallel
Strand 5	D	3	8	parallel
Strand 6	D	199	204	parallel
Strand 7	D	223	226	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	123	125	anti-parallel
Strand 3	D	175	180	anti-parallel
Strand 4	D	166	171	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	73	first strand
Strand 2	F	62	65	anti-parallel
Strand 3	F	36	41	parallel
Strand 4	F	3	8	parallel
Strand 5	F	199	204	parallel
Strand 6	F	223	226	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	118	first strand
Strand 2	F	123	125	anti-parallel
Strand 3	F	175	180	anti-parallel
Strand 4	F	166	171	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	72	73	anti-parallel
Strand 3	C	62	64	anti-parallel
Strand 4	C	36	40	parallel
Strand 5	C	3	8	parallel
Strand 6	C	199	204	parallel
Strand 7	C	223	226	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	123	125	anti-parallel
Strand 3	C	175	180	anti-parallel
Strand 4	C	166	171	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	80	first strand
Strand 2	E	70	73	anti-parallel
Strand 3	E	62	64	anti-parallel
Strand 4	E	36	40	parallel
Strand 5	E	3	8	parallel
Strand 6	E	199	204	parallel
Strand 7	E	223	226	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	119	first strand
Strand 2	E	122	125	anti-parallel
Strand 3	E	175	180	anti-parallel
Strand 4	E	166	171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HPB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HPB