Analysis of interatomic Contacts of Structural Units in PDB entry:
9HPC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HPC entry

There are 8 chains in PDB entry 9HPC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 397	ARG 828
B	ILE 397	ARG 828
C	ILE 397	ARG 828
D	ILE 397	ARG 828
W	ARG 6	ALA 210
X	ARG 6	ALA 210
Y	ARG 6	ALA 210
Z	ARG 6	ALA 210

There are 94 helices in PDB entry 9HPC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	413	417	Right-handed 310
Helix 2	AA2	A	418	421	Right-handed 310
Helix 3	AA3	A	425	439	Right-handed alpha
Helix 4	AA4	A	463	471	Right-handed alpha
Helix 5	AA5	A	484	489	Right-handed alpha
Helix 6	AA6	A	517	521	Right-handed 310
Helix 7	AA7	A	524	548	Right-handed alpha
Helix 8	AA8	A	549	554	Right-handed alpha
Helix 9	AA9	A	576	590	Right-handed alpha
Helix 10	AB1	A	599	633	Right-handed alpha
Helix 11	AB2	A	639	646	Right-handed alpha
Helix 12	AB3	A	657	666	Right-handed alpha
Helix 13	AB4	A	668	681	Right-handed alpha
Helix 14	AB5	A	689	701	Right-handed alpha
Helix 15	AB6	A	710	718	Right-handed alpha
Helix 16	AB7	A	746	760	Right-handed alpha
Helix 17	AB8	A	761	772	Right-handed alpha
Helix 18	AB9	A	792	795	Right-handed 310
Helix 19	AC1	A	796	828	Right-handed alpha
Helix 20	AC2	B	413	417	Right-handed 310
Helix 21	AC3	B	418	421	Right-handed 310
Helix 22	AC4	B	425	439	Right-handed alpha
Helix 23	AC5	B	463	471	Right-handed alpha
Helix 24	AC6	B	484	489	Right-handed alpha
Helix 25	AC7	B	517	521	Right-handed 310
Helix 26	AC8	B	524	548	Right-handed alpha
Helix 27	AC9	B	549	554	Right-handed alpha
Helix 28	AD1	B	576	590	Right-handed alpha
Helix 29	AD2	B	599	630	Right-handed alpha
Helix 30	AD3	B	639	646	Right-handed alpha
Helix 31	AD4	B	657	666	Right-handed alpha
Helix 32	AD5	B	668	681	Right-handed alpha
Helix 33	AD6	B	689	700	Right-handed alpha
Helix 34	AD7	B	710	718	Right-handed alpha
Helix 35	AD8	B	746	760	Right-handed alpha
Helix 36	AD9	B	761	772	Right-handed alpha
Helix 37	AE1	B	792	795	Right-handed 310
Helix 38	AE2	B	796	828	Right-handed alpha
Helix 39	AE3	C	418	421	Right-handed 310
Helix 40	AE4	C	425	439	Right-handed alpha
Helix 41	AE5	C	463	471	Right-handed alpha
Helix 42	AE6	C	484	489	Right-handed alpha
Helix 43	AE7	C	517	521	Right-handed 310
Helix 44	AE8	C	524	548	Right-handed alpha
Helix 45	AE9	C	549	554	Right-handed alpha
Helix 46	AF1	C	576	589	Right-handed alpha
Helix 47	AF2	C	599	633	Right-handed alpha
Helix 48	AF3	C	639	646	Right-handed alpha
Helix 49	AF4	C	657	666	Right-handed alpha
Helix 50	AF5	C	668	681	Right-handed alpha
Helix 51	AF6	C	689	700	Right-handed alpha
Helix 52	AF7	C	710	718	Right-handed alpha
Helix 53	AF8	C	746	760	Right-handed alpha
Helix 54	AF9	C	761	772	Right-handed alpha
Helix 55	AG1	C	792	795	Right-handed 310
Helix 56	AG2	C	796	827	Right-handed alpha
Helix 57	AG3	D	413	417	Right-handed 310
Helix 58	AG4	D	418	421	Right-handed 310
Helix 59	AG5	D	425	439	Right-handed alpha
Helix 60	AG6	D	463	471	Right-handed alpha
Helix 61	AG7	D	484	489	Right-handed alpha
Helix 62	AG8	D	517	521	Right-handed 310
Helix 63	AG9	D	524	548	Right-handed alpha
Helix 64	AH1	D	576	589	Right-handed alpha
Helix 65	AH2	D	599	630	Right-handed alpha
Helix 66	AH3	D	639	646	Right-handed alpha
Helix 67	AH4	D	657	666	Right-handed alpha
Helix 68	AH5	D	668	680	Right-handed alpha
Helix 69	AH6	D	689	700	Right-handed alpha
Helix 70	AH7	D	710	718	Right-handed alpha
Helix 71	AH8	D	746	760	Right-handed alpha
Helix 72	AH9	D	761	772	Right-handed alpha
Helix 73	AI1	D	792	795	Right-handed 310
Helix 74	AI2	D	796	828	Right-handed alpha
Helix 75	AI3	W	7	30	Right-handed alpha
Helix 76	AI4	W	95	105	Right-handed alpha
Helix 77	AI5	W	105	128	Right-handed alpha
Helix 78	AI6	W	132	162	Right-handed alpha
Helix 79	AI7	W	177	210	Right-handed alpha
Helix 80	AI8	X	7	30	Right-handed alpha
Helix 81	AI9	X	96	105	Right-handed alpha
Helix 82	AJ1	X	105	128	Right-handed alpha
Helix 83	AJ2	X	132	162	Right-handed alpha
Helix 84	AJ3	X	177	210	Right-handed alpha
Helix 85	AJ4	Y	7	30	Right-handed alpha
Helix 86	AJ5	Y	96	105	Right-handed alpha
Helix 87	AJ6	Y	105	128	Right-handed alpha
Helix 88	AJ7	Y	132	162	Right-handed alpha
Helix 89	AJ8	Y	177	210	Right-handed alpha
Helix 90	AJ9	Z	7	30	Right-handed alpha
Helix 91	AK1	Z	95	105	Right-handed alpha
Helix 92	AK2	Z	105	128	Right-handed alpha
Helix 93	AK3	Z	132	162	Right-handed alpha
Helix 94	AK4	Z	177	210	Right-handed alpha

There are 23 sheets in PDB entry 9HPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	446	first strand
Strand 2	A	398	401	parallel
Strand 3	A	476	477	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	423	424	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	493	first strand
Strand 2	A	739	741	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	500	first strand
Strand 2	A	734	736	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	652	first strand
Strand 2	A	704	709	parallel
Strand 3	A	502	507	anti-parallel
Strand 4	A	724	727	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	446	first strand
Strand 2	B	398	401	parallel
Strand 3	B	476	482	parallel
Strand 4	B	734	741	anti-parallel
Strand 5	B	491	493	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	446	first strand
Strand 2	B	398	401	parallel
Strand 3	B	476	482	parallel
Strand 4	B	734	741	anti-parallel
Strand 5	B	498	500	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	423	424	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	652	first strand
Strand 2	B	704	709	parallel
Strand 3	B	502	507	anti-parallel
Strand 4	B	724	727	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	443	446	first strand
Strand 2	C	398	401	parallel
Strand 3	C	476	477	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	410	first strand
Strand 2	C	423	424	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	493	first strand
Strand 2	C	739	741	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	500	first strand
Strand 2	C	734	736	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	653	first strand
Strand 2	C	704	709	parallel
Strand 3	C	502	507	anti-parallel
Strand 4	C	724	727	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	446	first strand
Strand 2	D	398	401	parallel
Strand 3	D	476	477	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	423	424	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	491	493	first strand
Strand 2	D	739	741	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	498	500	first strand
Strand 2	D	734	736	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	650	652	first strand
Strand 2	D	704	709	parallel
Strand 3	D	502	507	anti-parallel
Strand 4	D	724	727	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	77	79	first strand
Strand 2	W	65	68	anti-parallel
Strand 3	W	57	61	anti-parallel
Strand 4	W	34	38	anti-parallel
Strand 5	W	175	176	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	77	79	first strand
Strand 2	X	65	68	anti-parallel
Strand 3	X	57	61	anti-parallel
Strand 4	X	34	38	anti-parallel
Strand 5	X	175	176	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	77	79	first strand
Strand 2	Y	65	68	anti-parallel
Strand 3	Y	57	61	anti-parallel
Strand 4	Y	34	38	anti-parallel
Strand 5	Y	175	176	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	77	79	first strand
Strand 2	Z	65	68	anti-parallel
Strand 3	Z	58	61	anti-parallel
Strand 4	Z	34	37	anti-parallel
Strand 5	Z	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HPC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HPC