Analysis of interatomic Contacts of Structural Units in PDB entry:
9HPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HPD entry

There are 2 chains in PDB entry 9HPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 2SER 381
C
 PHE 2LYS 756
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 9HPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
16 33Right-handed alpha
Helix 2
AA2
B
54 69Right-handed alpha
Helix 3
AA3
B
81 92Right-handed alpha
Helix 4
AA4
B
117 128Right-handed alpha
Helix 5
AA5
B
143 157Right-handed alpha
Helix 6
AA6
B
170 184Right-handed alpha
Helix 7
AA7
B
194 209Right-handed alpha
Helix 8
AA8
B
223 227Right-handed 310
Helix 9
AA9
B
229 236Right-handed alpha
Helix 10
AB1
B
249 260Right-handed alpha
Helix 11
AB2
B
276 299Right-handed alpha
Helix 12
AB3
B
322 332Right-handed alpha
Helix 13
AB4
C
17 33Right-handed alpha
Helix 14
AB5
C
54 69Right-handed alpha
Helix 15
AB6
C
81 93Right-handed alpha
Helix 16
AB7
C
117 129Right-handed alpha
Helix 17
AB8
C
143 157Right-handed alpha
Helix 18
AB9
C
170 184Right-handed alpha
Helix 19
AC1
C
194 209Right-handed alpha
Helix 20
AC2
C
229 236Right-handed alpha
Helix 21
AC3
C
249 261Right-handed alpha
Helix 22
AC4
C
276 299Right-handed alpha
Helix 23
AC5
C
322 332Right-handed alpha
Helix 24
AC6
C
425 438Right-handed alpha
Helix 25
AC7
C
463 471Right-handed alpha
Helix 26
AC8
C
484 489Right-handed alpha
Helix 27
AC9
C
746 756Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9HPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 49first strand
Strand 2
B
5 12parallel
Strand 3
B
72 75parallel
Strand 4
B
95 98parallel
Strand 5
B
110 112parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 164first strand
Strand 2
B
134 137parallel
Strand 3
B
188 192parallel
Strand 4
B
216 219parallel
Strand 5
B
238 243parallel
Strand 6
B
355 360anti-parallel
Strand 7
B
365 371anti-parallel
Strand 8
B
378 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 337first strand
Strand 2
B
340 343anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 49first strand
Strand 2
C
5 12parallel
Strand 3
C
73 75parallel
Strand 4
C
96 98parallel
Strand 5
C
110 112parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 164first strand
Strand 2
C
132 137parallel
Strand 3
C
188 192parallel
Strand 4
C
216 219parallel
Strand 5
C
238 243parallel
Strand 6
C
354 360anti-parallel
Strand 7
C
365 372anti-parallel
Strand 8
C
376 379anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
335 337first strand
Strand 2
C
340 344anti-parallel
Strand 3
C
350 351anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
396 401first strand
Strand 2
C
441 446parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
491 493first strand
Strand 2
C
739 741anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il