Analysis of interatomic Contacts of Structural Units in PDB entry:
9HPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HPF entry

There are 2 chains in PDB entry 9HPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 2SER 381
B
 PHE 2LYS 767
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9HPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 33Right-handed alpha
Helix 2
AA2
A
54 69Right-handed alpha
Helix 3
AA3
A
81 93Right-handed alpha
Helix 4
AA4
A
117 129Right-handed alpha
Helix 5
AA5
A
143 157Right-handed alpha
Helix 6
AA6
A
170 184Right-handed alpha
Helix 7
AA7
A
194 208Right-handed alpha
Helix 8
AA8
A
249 261Right-handed alpha
Helix 9
AA9
A
276 299Right-handed alpha
Helix 10
AB1
A
322 332Right-handed alpha
Helix 11
AB2
B
16 33Right-handed alpha
Helix 12
AB3
B
54 69Right-handed alpha
Helix 13
AB4
B
81 93Right-handed alpha
Helix 14
AB5
B
117 128Right-handed alpha
Helix 15
AB6
B
143 157Right-handed alpha
Helix 16
AB7
B
170 184Right-handed alpha
Helix 17
AB8
B
194 209Right-handed alpha
Helix 18
AB9
B
229 235Right-handed alpha
Helix 19
AC1
B
249 261Right-handed alpha
Helix 20
AC2
B
276 299Right-handed alpha
Helix 21
AC3
B
321 330Right-handed alpha
Helix 22
AC4
B
427 439Right-handed alpha
Helix 23
AC5
B
465 472Right-handed alpha
Helix 24
AC6
B
484 490Right-handed alpha
Helix 25
AC7
B
746 760Right-handed alpha
Helix 26
AC8
B
761 767Right-handed alpha
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There are 10 sheets in PDB entry 9HPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
5 11parallel
Strand 3
A
73 75parallel
Strand 4
A
96 98parallel
Strand 5
A
111 112parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
134 137parallel
Strand 3
A
188 192parallel
Strand 4
A
216 219parallel
Strand 5
A
238 240parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
340 342anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
366 369anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 49first strand
Strand 2
B
5 12parallel
Strand 3
B
73 75parallel
Strand 4
B
96 98parallel
Strand 5
B
110 112parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 164first strand
Strand 2
B
132 137parallel
Strand 3
B
189 192parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 218first strand
Strand 2
B
238 240parallel
Strand 3
B
354 360anti-parallel
Strand 4
B
366 372anti-parallel
Strand 5
B
376 378anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 344first strand
Strand 2
B
350 351anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 401first strand
Strand 2
B
443 446parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
491 492first strand
Strand 2
B
740 741anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il