Analysis of interatomic Contacts of Structural Units in PDB entry:
9HPK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HPK entry

There are 8 chains in PDB entry 9HPK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 395	ARG 828
B	ARG 395	ARG 828
C	ARG 395	ARG 828
D	ARG 395	ARG 828
W	ARG 6	ALA 210
X	ARG 6	ALA 210
Y	ARG 6	ALA 210
Z	ARG 6	ALA 210

There are 92 helices in PDB entry 9HPK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	413	417	Right-handed 310
Helix 2	AA2	A	418	421	Right-handed 310
Helix 3	AA3	A	425	439	Right-handed alpha
Helix 4	AA4	A	463	471	Right-handed alpha
Helix 5	AA5	A	484	489	Right-handed alpha
Helix 6	AA6	A	517	521	Right-handed 310
Helix 7	AA7	A	524	548	Right-handed alpha
Helix 8	AA8	A	576	589	Right-handed alpha
Helix 9	AA9	A	599	628	Right-handed alpha
Helix 10	AB1	A	639	645	Right-handed alpha
Helix 11	AB2	A	657	666	Right-handed alpha
Helix 12	AB3	A	668	681	Right-handed alpha
Helix 13	AB4	A	689	700	Right-handed alpha
Helix 14	AB5	A	710	717	Right-handed alpha
Helix 15	AB6	A	746	760	Right-handed alpha
Helix 16	AB7	A	761	772	Right-handed alpha
Helix 17	AB8	A	792	828	Right-handed alpha
Helix 18	AB9	B	425	438	Right-handed alpha
Helix 19	AC1	B	463	471	Right-handed alpha
Helix 20	AC2	B	484	489	Right-handed alpha
Helix 21	AC3	B	517	521	Right-handed 310
Helix 22	AC4	B	524	548	Right-handed alpha
Helix 23	AC5	B	549	553	Right-handed 310
Helix 24	AC6	B	576	589	Right-handed alpha
Helix 25	AC7	B	599	621	Right-handed alpha
Helix 26	AC8	B	623	630	Right-handed alpha
Helix 27	AC9	B	639	646	Right-handed alpha
Helix 28	AD1	B	657	666	Right-handed alpha
Helix 29	AD2	B	668	680	Right-handed alpha
Helix 30	AD3	B	689	700	Right-handed alpha
Helix 31	AD4	B	710	718	Right-handed alpha
Helix 32	AD5	B	746	760	Right-handed alpha
Helix 33	AD6	B	761	772	Right-handed alpha
Helix 34	AD7	B	796	828	Right-handed alpha
Helix 35	AD8	C	413	417	Right-handed 310
Helix 36	AD9	C	418	421	Right-handed 310
Helix 37	AE1	C	425	438	Right-handed alpha
Helix 38	AE2	C	463	471	Right-handed alpha
Helix 39	AE3	C	484	489	Right-handed alpha
Helix 40	AE4	C	517	521	Right-handed 310
Helix 41	AE5	C	524	548	Right-handed alpha
Helix 42	AE6	C	576	589	Right-handed alpha
Helix 43	AE7	C	599	628	Right-handed alpha
Helix 44	AE8	C	639	646	Right-handed alpha
Helix 45	AE9	C	657	666	Right-handed alpha
Helix 46	AF1	C	668	680	Right-handed alpha
Helix 47	AF2	C	689	700	Right-handed alpha
Helix 48	AF3	C	710	718	Right-handed alpha
Helix 49	AF4	C	746	760	Right-handed alpha
Helix 50	AF5	C	761	772	Right-handed alpha
Helix 51	AF6	C	792	795	Right-handed 310
Helix 52	AF7	C	796	828	Right-handed alpha
Helix 53	AF8	D	413	417	Right-handed 310
Helix 54	AF9	D	418	421	Right-handed 310
Helix 55	AG1	D	425	438	Right-handed alpha
Helix 56	AG2	D	463	471	Right-handed alpha
Helix 57	AG3	D	484	489	Right-handed alpha
Helix 58	AG4	D	517	521	Right-handed 310
Helix 59	AG5	D	524	548	Right-handed alpha
Helix 60	AG6	D	549	553	Right-handed 310
Helix 61	AG7	D	576	589	Right-handed alpha
Helix 62	AG8	D	599	621	Right-handed alpha
Helix 63	AG9	D	623	630	Right-handed alpha
Helix 64	AH1	D	639	646	Right-handed alpha
Helix 65	AH2	D	657	665	Right-handed alpha
Helix 66	AH3	D	668	681	Right-handed alpha
Helix 67	AH4	D	689	700	Right-handed alpha
Helix 68	AH5	D	710	718	Right-handed alpha
Helix 69	AH6	D	746	760	Right-handed alpha
Helix 70	AH7	D	761	771	Right-handed alpha
Helix 71	AH8	D	792	795	Right-handed 310
Helix 72	AH9	D	796	828	Right-handed alpha
Helix 73	AI1	W	7	30	Right-handed alpha
Helix 74	AI2	W	95	105	Right-handed alpha
Helix 75	AI3	W	105	128	Right-handed alpha
Helix 76	AI4	W	132	161	Right-handed alpha
Helix 77	AI5	W	177	210	Right-handed alpha
Helix 78	AI6	X	7	30	Right-handed alpha
Helix 79	AI7	X	95	105	Right-handed alpha
Helix 80	AI8	X	105	128	Right-handed alpha
Helix 81	AI9	X	132	161	Right-handed alpha
Helix 82	AJ1	X	177	208	Right-handed alpha
Helix 83	AJ2	Y	7	30	Right-handed alpha
Helix 84	AJ3	Y	95	105	Right-handed alpha
Helix 85	AJ4	Y	105	128	Right-handed alpha
Helix 86	AJ5	Y	132	161	Right-handed alpha
Helix 87	AJ6	Y	177	210	Right-handed alpha
Helix 88	AJ7	Z	7	30	Right-handed alpha
Helix 89	AJ8	Z	95	105	Right-handed alpha
Helix 90	AJ9	Z	105	128	Right-handed alpha
Helix 91	AK1	Z	132	161	Right-handed alpha
Helix 92	AK2	Z	177	209	Right-handed alpha

There are 22 sheets in PDB entry 9HPK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	446	first strand
Strand 2	A	397	401	parallel
Strand 3	A	476	482	parallel
Strand 4	A	734	741	anti-parallel
Strand 5	A	491	492	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	446	first strand
Strand 2	A	397	401	parallel
Strand 3	A	476	482	parallel
Strand 4	A	734	741	anti-parallel
Strand 5	A	498	500	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	423	424	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	653	first strand
Strand 2	A	704	709	parallel
Strand 3	A	502	507	anti-parallel
Strand 4	A	724	725	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	446	first strand
Strand 2	B	397	401	parallel
Strand 3	B	476	477	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	423	424	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	493	first strand
Strand 2	B	739	741	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	500	first strand
Strand 2	B	734	736	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	652	first strand
Strand 2	B	704	709	parallel
Strand 3	B	502	507	anti-parallel
Strand 4	B	724	727	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	401	first strand
Strand 2	C	441	446	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	410	first strand
Strand 2	C	423	424	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	482	first strand
Strand 2	C	734	741	anti-parallel
Strand 3	C	491	493	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	482	first strand
Strand 2	C	734	741	anti-parallel
Strand 3	C	498	500	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	652	first strand
Strand 2	C	704	709	parallel
Strand 3	C	502	507	anti-parallel
Strand 4	C	724	727	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	446	first strand
Strand 2	D	397	401	parallel
Strand 3	D	476	482	parallel
Strand 4	D	734	741	anti-parallel
Strand 5	D	491	493	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	446	first strand
Strand 2	D	397	401	parallel
Strand 3	D	476	482	parallel
Strand 4	D	734	741	anti-parallel
Strand 5	D	498	500	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	423	424	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	686	687	first strand
Strand 2	D	650	654	parallel
Strand 3	D	704	709	parallel
Strand 4	D	502	507	anti-parallel
Strand 5	D	724	727	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	77	79	first strand
Strand 2	W	65	68	anti-parallel
Strand 3	W	57	61	anti-parallel
Strand 4	W	34	38	anti-parallel
Strand 5	W	175	176	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	77	79	first strand
Strand 2	X	65	68	anti-parallel
Strand 3	X	57	61	anti-parallel
Strand 4	X	34	38	anti-parallel
Strand 5	X	175	176	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	34	36	first strand
Strand 2	Y	59	61	anti-parallel
Strand 3	Y	65	68	anti-parallel
Strand 4	Y	77	79	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	77	79	first strand
Strand 2	Z	65	68	anti-parallel
Strand 3	Z	59	61	anti-parallel
Strand 4	Z	34	36	anti-parallel
Strand 5	Z	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HPK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HPK