Analysis of interatomic Contacts of Structural Units in PDB entry:
9HQ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HQ4 entry

There are 5 chains in PDB entry 9HQ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 439
B	MET 1	GLN 426
C	MET 1	SER 439
D	MET 1	ASP 427
E	PRO 128	GLU 657

There are 94 helices in PDB entry 9HQ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	29	Right-handed alpha
Helix 2	AA2	A	71	80	Right-handed alpha
Helix 3	AA3	A	102	108	Right-handed alpha
Helix 4	AA4	A	110	113	Right-handed 310
Helix 5	AA5	A	114	127	Right-handed alpha
Helix 6	AA6	A	144	161	Right-handed alpha
Helix 7	AA7	A	182	191	Right-handed alpha
Helix 8	AA8	A	192	197	Right-handed alpha
Helix 9	AA9	A	205	216	Right-handed alpha
Helix 10	AB1	A	223	239	Right-handed alpha
Helix 11	AB2	A	251	260	Right-handed alpha
Helix 12	AB3	A	280	284	Right-handed 310
Helix 13	AB4	A	287	297	Right-handed alpha
Helix 14	AB5	A	306	310	Right-handed 310
Helix 15	AB6	A	324	338	Right-handed alpha
Helix 16	AB7	A	383	400	Right-handed alpha
Helix 17	AB8	A	404	410	Right-handed alpha
Helix 18	AB9	A	415	435	Right-handed alpha
Helix 19	AC1	B	10	29	Right-handed alpha
Helix 20	AC2	B	69	78	Right-handed alpha
Helix 21	AC3	B	86	88	Right-handed 310
Helix 22	AC4	B	100	106	Right-handed alpha
Helix 23	AC5	B	109	125	Right-handed alpha
Helix 24	AC6	B	142	159	Right-handed alpha
Helix 25	AC7	B	180	190	Right-handed alpha
Helix 26	AC8	B	203	214	Right-handed alpha
Helix 27	AC9	B	221	237	Right-handed alpha
Helix 28	AD1	B	237	242	Right-handed alpha
Helix 29	AD2	B	249	256	Right-handed alpha
Helix 30	AD3	B	278	282	Right-handed 310
Helix 31	AD4	B	285	292	Right-handed alpha
Helix 32	AD5	B	304	308	Right-handed 310
Helix 33	AD6	B	322	337	Right-handed alpha
Helix 34	AD7	B	374	390	Right-handed alpha
Helix 35	AD8	B	394	401	Right-handed alpha
Helix 36	AD9	B	404	425	Right-handed alpha
Helix 37	AE1	C	10	29	Right-handed alpha
Helix 38	AE2	C	47	51	Right-handed 310
Helix 39	AE3	C	75	81	Right-handed alpha
Helix 40	AE4	C	88	90	Right-handed 310
Helix 41	AE5	C	102	108	Right-handed alpha
Helix 42	AE6	C	110	113	Right-handed 310
Helix 43	AE7	C	114	127	Right-handed alpha
Helix 44	AE8	C	143	160	Right-handed alpha
Helix 45	AE9	C	182	190	Right-handed alpha
Helix 46	AF1	C	190	197	Right-handed alpha
Helix 47	AF2	C	206	216	Right-handed alpha
Helix 48	AF3	C	223	239	Right-handed alpha
Helix 49	AF4	C	239	244	Right-handed alpha
Helix 50	AF5	C	251	260	Right-handed alpha
Helix 51	AF6	C	278	282	Right-handed 310
Helix 52	AF7	C	287	296	Right-handed alpha
Helix 53	AF8	C	297	301	Right-handed 310
Helix 54	AF9	C	324	336	Right-handed alpha
Helix 55	AG1	C	383	401	Right-handed alpha
Helix 56	AG2	C	404	411	Right-handed alpha
Helix 57	AG3	C	414	436	Right-handed alpha
Helix 58	AG4	D	10	28	Right-handed alpha
Helix 59	AG5	D	40	45	Right-handed 310
Helix 60	AG6	D	55	57	Right-handed 310
Helix 61	AG7	D	69	78	Right-handed alpha
Helix 62	AG8	D	86	88	Right-handed 310
Helix 63	AG9	D	100	106	Right-handed alpha
Helix 64	AH1	D	109	125	Right-handed alpha
Helix 65	AH2	D	142	157	Right-handed alpha
Helix 66	AH3	D	180	194	Right-handed alpha
Helix 67	AH4	D	203	214	Right-handed alpha
Helix 68	AH5	D	221	237	Right-handed alpha
Helix 69	AH6	D	249	258	Right-handed alpha
Helix 70	AH7	D	285	294	Right-handed alpha
Helix 71	AH8	D	304	308	Right-handed 310
Helix 72	AH9	D	322	337	Right-handed alpha
Helix 73	AI1	D	338	341	Right-handed 310
Helix 74	AI2	D	373	388	Right-handed alpha
Helix 75	AI3	D	395	400	Right-handed alpha
Helix 76	AI4	D	404	427	Right-handed alpha
Helix 77	AI5	E	136	138	Right-handed 310
Helix 78	AI6	E	139	150	Right-handed alpha
Helix 79	AI7	E	171	175	Right-handed 310
Helix 80	AI8	E	187	192	Right-handed alpha
Helix 81	AI9	E	193	208	Right-handed alpha
Helix 82	AJ1	E	224	239	Right-handed alpha
Helix 83	AJ2	E	264	268	Right-handed 310
Helix 84	AJ3	E	273	277	Right-handed 310
Helix 85	AJ4	E	344	349	Right-handed alpha
Helix 86	AJ5	E	368	377	Right-handed alpha
Helix 87	AJ6	E	381	412	Right-handed alpha
Helix 88	AJ7	E	466	484	Right-handed alpha
Helix 89	AJ8	E	485	499	Right-handed alpha
Helix 90	AJ9	E	548	559	Right-handed alpha
Helix 91	AK1	E	569	580	Right-handed alpha
Helix 92	AK2	E	588	607	Right-handed alpha
Helix 93	AK3	E	616	631	Right-handed alpha
Helix 94	AK4	E	638	657	Right-handed alpha

There are 16 sheets in PDB entry 9HQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	3	9	parallel
Strand 4	A	132	140	parallel
Strand 5	A	165	171	parallel
Strand 6	A	200	204	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	356	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	64	67	parallel
Strand 3	B	3	9	parallel
Strand 4	B	130	138	parallel
Strand 5	B	163	169	parallel
Strand 6	B	199	201	parallel
Strand 7	B	265	266	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	58	61	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	354	first strand
Strand 2	B	310	319	parallel
Strand 3	B	363	364	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	354	first strand
Strand 2	B	310	319	parallel
Strand 3	B	367	371	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	65	69	parallel
Strand 3	C	5	9	parallel
Strand 4	C	134	138	parallel
Strand 5	C	165	172	parallel
Strand 6	C	200	205	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	272	first strand
Strand 2	C	373	381	anti-parallel
Strand 3	C	312	321	anti-parallel
Strand 4	C	351	356	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	63	67	parallel
Strand 3	D	3	9	parallel
Strand 4	D	130	138	parallel
Strand 5	D	163	169	parallel
Strand 6	D	198	202	parallel
Strand 7	D	265	270	parallel
Strand 8	D	363	371	anti-parallel
Strand 9	D	310	319	anti-parallel
Strand 10	D	349	354	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	53	first strand
Strand 2	D	59	61	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	155	first strand
Strand 2	E	130	135	parallel
Strand 3	E	165	168	parallel
Strand 4	E	181	182	parallel
Strand 5	E	420	421	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	221	first strand
Strand 2	E	279	283	anti-parallel
Strand 3	E	246	250	anti-parallel
Strand 4	E	260	262	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	290	291	first strand
Strand 2	E	294	306	anti-parallel
Strand 3	E	423	431	anti-parallel
Strand 4	E	437	443	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	365	367	first strand
Strand 2	E	319	322	anti-parallel
Strand 3	E	294	306	anti-parallel
Strand 4	E	311	315	anti-parallel
Strand 5	E	532	533	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HQ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HQ4