Analysis of interatomic Contacts of Structural Units in PDB entry:
9HQN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HQN entry

There are 3 chains in PDB entry 9HQN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 69	LYS 329
B	LEU 69	ILE 332
C	LEU 69	LYS 329

There are 16 helices in PDB entry 9HQN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	87	Right-handed alpha
Helix 2	AA2	A	88	96	Right-handed alpha
Helix 3	AA3	A	206	212	Right-handed alpha
Helix 4	AA4	A	215	227	Right-handed alpha
Helix 5	AA5	A	272	276	Right-handed 310
Helix 6	AA6	A	302	329	Right-handed alpha
Helix 7	AA7	B	73	96	Right-handed alpha
Helix 8	AA8	B	206	212	Right-handed alpha
Helix 9	AA9	B	215	227	Right-handed alpha
Helix 10	AB1	B	272	276	Right-handed 310
Helix 11	AB2	B	302	331	Right-handed alpha
Helix 12	AB3	C	73	98	Right-handed alpha
Helix 13	AB4	C	206	212	Right-handed alpha
Helix 14	AB5	C	215	227	Right-handed alpha
Helix 15	AB6	C	272	276	Right-handed 310
Helix 16	AB7	C	302	329	Right-handed alpha

There are 9 sheets in PDB entry 9HQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	107	first strand
Strand 2	A	291	298	anti-parallel
Strand 3	A	236	248	parallel
Strand 4	A	279	287	parallel
Strand 5	A	182	189	anti-parallel
Strand 6	A	124	131	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	107	first strand
Strand 2	A	291	298	anti-parallel
Strand 3	A	236	248	parallel
Strand 4	A	255	266	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	157	first strand
Strand 2	A	165	172	anti-parallel
Strand 3	A	115	119	anti-parallel
Strand 4	A	198	204	anti-parallel
Strand 5	A	229	233	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	107	first strand
Strand 2	B	291	298	anti-parallel
Strand 3	B	236	248	parallel
Strand 4	B	279	287	parallel
Strand 5	B	182	189	anti-parallel
Strand 6	B	124	131	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	107	first strand
Strand 2	B	291	298	anti-parallel
Strand 3	B	236	248	parallel
Strand 4	B	254	266	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	157	first strand
Strand 2	B	165	172	anti-parallel
Strand 3	B	115	119	anti-parallel
Strand 4	B	198	204	anti-parallel
Strand 5	B	230	233	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	107	first strand
Strand 2	C	291	298	anti-parallel
Strand 3	C	236	248	parallel
Strand 4	C	279	287	parallel
Strand 5	C	182	189	anti-parallel
Strand 6	C	124	131	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	107	first strand
Strand 2	C	291	298	anti-parallel
Strand 3	C	236	248	parallel
Strand 4	C	255	266	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	157	first strand
Strand 2	C	165	172	anti-parallel
Strand 3	C	115	119	anti-parallel
Strand 4	C	198	204	anti-parallel
Strand 5	C	229	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HQN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HQN