Analysis of interatomic Contacts of Structural Units in PDB entry:
9HQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HQP entry

There are 2 chains in PDB entry 9HQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 58SER 854
B
 LYS 58SER 854
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 9HQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 106Right-handed alpha
Helix 2
AA2
A
131 139Right-handed alpha
Helix 3
AA3
A
206 220Right-handed alpha
Helix 4
AA4
A
233 240Right-handed alpha
Helix 5
AA5
A
265 272Right-handed alpha
Helix 6
AA6
A
284 309Right-handed alpha
Helix 7
AA7
A
310 327Right-handed alpha
Helix 8
AA8
A
360 363Right-handed 310
Helix 9
AA9
A
364 369Right-handed alpha
Helix 10
AB1
A
375 378Right-handed 310
Helix 11
AB2
A
379 408Right-handed alpha
Helix 12
AB3
A
459 489Right-handed alpha
Helix 13
AB4
A
504 537Right-handed alpha
Helix 14
AB5
A
543 572Right-handed alpha
Helix 15
AB6
A
602 614Right-handed alpha
Helix 16
AB7
A
614 639Right-handed alpha
Helix 17
AB8
A
648 656Right-handed alpha
Helix 18
AB9
A
664 680Right-handed alpha
Helix 19
AC1
A
687 707Right-handed alpha
Helix 20
AC2
A
725 747Right-handed alpha
Helix 21
AC3
A
750 759Right-handed alpha
Helix 22
AC4
A
825 854Right-handed alpha
Helix 23
AC5
B
90 106Right-handed alpha
Helix 24
AC6
B
131 139Right-handed alpha
Helix 25
AC7
B
206 220Right-handed alpha
Helix 26
AC8
B
235 240Right-handed alpha
Helix 27
AC9
B
266 272Right-handed alpha
Helix 28
AD1
B
275 279Right-handed 310
Helix 29
AD2
B
284 293Right-handed alpha
Helix 30
AD3
B
293 303Right-handed alpha
Helix 31
AD4
B
304 309Right-handed alpha
Helix 32
AD5
B
309 327Right-handed alpha
Helix 33
AD6
B
328 332Right-handed 310
Helix 34
AD7
B
360 363Right-handed 310
Helix 35
AD8
B
364 369Right-handed alpha
Helix 36
AD9
B
371 376Right-handed alpha
Helix 37
AE1
B
377 408Right-handed alpha
Helix 38
AE2
B
459 488Right-handed alpha
Helix 39
AE3
B
504 537Right-handed alpha
Helix 40
AE4
B
543 572Right-handed alpha
Helix 41
AE5
B
602 614Right-handed alpha
Helix 42
AE6
B
614 639Right-handed alpha
Helix 43
AE7
B
648 656Right-handed alpha
Helix 44
AE8
B
664 680Right-handed alpha
Helix 45
AE9
B
687 707Right-handed alpha
Helix 46
AF1
B
725 747Right-handed alpha
Helix 47
AF2
B
750 760Right-handed alpha
Helix 48
AF3
B
825 854Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9HQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
73 76anti-parallel
Strand 3
A
244 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
230 231anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
782 783first strand
Strand 2
A
808 809anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
73 76anti-parallel
Strand 3
B
244 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 222first strand
Strand 2
B
230 231anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
782 783first strand
Strand 2
B
808 809anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il