Analysis of interatomic Contacts of Structural Units in PDB entry:
9HQX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HQX entry

There are 6 chains in PDB entry 9HQX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	VAL 660
f	MET 1	VAL 660
A	SER 26	ALA 403
d	MET 1	LEU 164
E	A 1	T 29
F	A 32	T 60

There are 67 helices in PDB entry 9HQX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	42	51	Right-handed alpha
Helix 2	AA2	B	118	129	Right-handed alpha
Helix 3	AA3	B	151	158	Right-handed 310
Helix 4	AA4	B	161	167	Right-handed alpha
Helix 5	AA5	B	177	192	Right-handed alpha
Helix 6	AA6	B	196	233	Right-handed alpha
Helix 7	AA7	B	233	245	Right-handed alpha
Helix 8	AA8	B	255	269	Right-handed alpha
Helix 9	AA9	B	282	342	Right-handed alpha
Helix 10	AB1	B	357	378	Right-handed alpha
Helix 11	AB2	B	383	421	Right-handed alpha
Helix 12	AB3	B	422	451	Right-handed alpha
Helix 13	AB4	B	455	478	Right-handed alpha
Helix 14	AB5	B	479	502	Right-handed alpha
Helix 15	AB6	B	536	558	Right-handed alpha
Helix 16	AB7	B	598	616	Right-handed alpha
Helix 17	AB8	B	629	633	Right-handed 310
Helix 18	AB9	f	42	51	Right-handed alpha
Helix 19	AC1	f	117	130	Right-handed alpha
Helix 20	AC2	f	151	157	Right-handed 310
Helix 21	AC3	f	161	166	Right-handed alpha
Helix 22	AC4	f	177	192	Right-handed alpha
Helix 23	AC5	f	196	225	Right-handed alpha
Helix 24	AC6	f	227	244	Right-handed alpha
Helix 25	AC7	f	255	269	Right-handed alpha
Helix 26	AC8	f	277	323	Right-handed alpha
Helix 27	AC9	f	334	342	Right-handed alpha
Helix 28	AD1	f	356	376	Right-handed alpha
Helix 29	AD2	f	377	383	Right-handed 310
Helix 30	AD3	f	389	420	Right-handed alpha
Helix 31	AD4	f	430	451	Right-handed alpha
Helix 32	AD5	f	455	476	Right-handed alpha
Helix 33	AD6	f	479	502	Right-handed alpha
Helix 34	AD7	f	536	558	Right-handed alpha
Helix 35	AD8	f	573	577	Right-handed 310
Helix 36	AD9	f	599	616	Right-handed alpha
Helix 37	AE1	f	629	635	Right-handed alpha
Helix 38	AE2	f	647	651	Right-handed 310
Helix 39	AE3	A	27	39	Right-handed alpha
Helix 40	AE4	A	80	95	Right-handed alpha
Helix 41	AE5	A	116	125	Right-handed alpha
Helix 42	AE6	A	127	143	Right-handed alpha
Helix 43	AE7	A	150	155	Right-handed alpha
Helix 44	AE8	A	156	169	Right-handed alpha
Helix 45	AE9	A	170	178	Right-handed alpha
Helix 46	AF1	A	189	201	Right-handed alpha
Helix 47	AF2	A	204	206	Right-handed 310
Helix 48	AF3	A	207	229	Right-handed alpha
Helix 49	AF4	A	236	257	Right-handed alpha
Helix 50	AF5	A	265	270	Right-handed alpha
Helix 51	AF6	A	275	285	Right-handed alpha
Helix 52	AF7	A	287	312	Right-handed alpha
Helix 53	AF8	A	319	341	Right-handed alpha
Helix 54	AF9	A	342	344	Right-handed 310
Helix 55	AG1	A	345	360	Right-handed alpha
Helix 56	AG2	A	372	383	Right-handed alpha
Helix 57	AG3	A	392	403	Right-handed alpha
Helix 58	AG4	d	3	10	Right-handed alpha
Helix 59	AG5	d	11	28	Right-handed alpha
Helix 60	AG6	d	37	43	Right-handed 310
Helix 61	AG7	d	44	49	Right-handed alpha
Helix 62	AG8	d	50	60	Right-handed alpha
Helix 63	AG9	d	64	71	Right-handed alpha
Helix 64	AH1	d	80	94	Right-handed alpha
Helix 65	AH2	d	94	108	Right-handed alpha
Helix 66	AH3	d	131	151	Right-handed alpha
Helix 67	AH4	d	152	160	Right-handed alpha

There are 9 sheets in PDB entry 9HQX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	4	12	anti-parallel
Strand 3	B	67	75	anti-parallel
Strand 4	B	81	86	anti-parallel
Strand 5	B	96	101	anti-parallel
Strand 6	B	116	117	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	570	first strand
Strand 2	B	621	625	parallel
Strand 3	B	29	32	parallel
Strand 4	B	639	641	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	355	356	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	514	first strand
Strand 2	B	519	523	anti-parallel
Strand 3	B	528	530	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	20	23	first strand
Strand 2	f	3	11	anti-parallel
Strand 3	f	69	76	anti-parallel
Strand 4	f	80	86	anti-parallel
Strand 5	f	99	101	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	159	160	first strand
Strand 2	f	566	570	parallel
Strand 3	f	621	625	parallel
Strand 4	f	29	32	parallel
Strand 5	f	641	642	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	511	514	first strand
Strand 2	f	519	522	anti-parallel
Strand 3	f	529	530	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	63	68	anti-parallel
Strand 3	A	105	110	parallel
Strand 4	A	180	181	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	111	114	first strand
Strand 2	d	118	121	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HQX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HQX