Analysis of interatomic Contacts of Structural Units in PDB entry:
9HRA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HRA entry

There are 8 chains in PDB entry 9HRA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	PHE 284
B	SER 0	LEU 283
D	SER 0	LEU 283
F	MET 1	PHE 284
G	GLN -1	PHE 284
I	SER 0	ARG 286
J	SER 0	LEU 283
L	SER 0	LYS 285

There are117 helices in PDB entry 9HRA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	14	Right-handed alpha
Helix 2	AA2	A	24	35	Right-handed alpha
Helix 3	AA3	A	42	50	Right-handed alpha
Helix 4	AA4	A	59	74	Right-handed alpha
Helix 5	AA5	A	88	102	Right-handed alpha
Helix 6	AA6	A	128	141	Right-handed alpha
Helix 7	AA7	A	154	174	Right-handed alpha
Helix 8	AA8	A	186	188	Right-handed 310
Helix 9	AA9	A	189	198	Right-handed alpha
Helix 10	AB1	A	215	222	Right-handed alpha
Helix 11	AB2	A	231	252	Right-handed alpha
Helix 12	AB3	A	254	261	Right-handed 310
Helix 13	AB4	A	263	271	Right-handed alpha
Helix 14	AB5	A	273	283	Right-handed alpha
Helix 15	AB6	B	2	14	Right-handed alpha
Helix 16	AB7	B	24	35	Right-handed alpha
Helix 17	AB8	B	42	50	Right-handed alpha
Helix 18	AB9	B	59	74	Right-handed alpha
Helix 19	AC1	B	88	102	Right-handed alpha
Helix 20	AC2	B	128	141	Right-handed alpha
Helix 21	AC3	B	154	160	Right-handed alpha
Helix 22	AC4	B	160	174	Right-handed alpha
Helix 23	AC5	B	186	188	Right-handed 310
Helix 24	AC6	B	189	197	Right-handed alpha
Helix 25	AC7	B	215	222	Right-handed alpha
Helix 26	AC8	B	231	252	Right-handed alpha
Helix 27	AC9	B	254	261	Right-handed 310
Helix 28	AD1	B	263	271	Right-handed alpha
Helix 29	AD2	B	273	283	Right-handed alpha
Helix 30	AD3	D	2	14	Right-handed alpha
Helix 31	AD4	D	24	35	Right-handed alpha
Helix 32	AD5	D	42	50	Right-handed alpha
Helix 33	AD6	D	59	74	Right-handed alpha
Helix 34	AD7	D	88	102	Right-handed alpha
Helix 35	AD8	D	128	141	Right-handed alpha
Helix 36	AD9	D	154	160	Right-handed alpha
Helix 37	AE1	D	160	174	Right-handed alpha
Helix 38	AE2	D	186	188	Right-handed 310
Helix 39	AE3	D	189	197	Right-handed alpha
Helix 40	AE4	D	215	222	Right-handed alpha
Helix 41	AE5	D	231	252	Right-handed alpha
Helix 42	AE6	D	254	261	Right-handed 310
Helix 43	AE7	D	263	271	Right-handed alpha
Helix 44	AE8	D	273	283	Right-handed alpha
Helix 45	AE9	F	2	14	Right-handed alpha
Helix 46	AF1	F	24	35	Right-handed alpha
Helix 47	AF2	F	42	50	Right-handed alpha
Helix 48	AF3	F	59	74	Right-handed alpha
Helix 49	AF4	F	88	102	Right-handed alpha
Helix 50	AF5	F	128	141	Right-handed alpha
Helix 51	AF6	F	154	160	Right-handed alpha
Helix 52	AF7	F	160	174	Right-handed alpha
Helix 53	AF8	F	186	188	Right-handed 310
Helix 54	AF9	F	189	198	Right-handed alpha
Helix 55	AG1	F	215	222	Right-handed alpha
Helix 56	AG2	F	231	252	Right-handed alpha
Helix 57	AG3	F	254	261	Right-handed 310
Helix 58	AG4	F	263	271	Right-handed alpha
Helix 59	AG5	F	273	283	Right-handed alpha
Helix 60	AG6	G	2	14	Right-handed alpha
Helix 61	AG7	G	24	35	Right-handed alpha
Helix 62	AG8	G	42	50	Right-handed alpha
Helix 63	AG9	G	59	72	Right-handed alpha
Helix 64	AH1	G	88	102	Right-handed alpha
Helix 65	AH2	G	128	141	Right-handed alpha
Helix 66	AH3	G	154	160	Right-handed alpha
Helix 67	AH4	G	160	174	Right-handed alpha
Helix 68	AH5	G	186	188	Right-handed 310
Helix 69	AH6	G	189	198	Right-handed alpha
Helix 70	AH7	G	215	222	Right-handed alpha
Helix 71	AH8	G	231	252	Right-handed alpha
Helix 72	AH9	G	254	261	Right-handed 310
Helix 73	AI1	G	263	271	Right-handed alpha
Helix 74	AI2	G	273	283	Right-handed alpha
Helix 75	AI3	I	2	14	Right-handed alpha
Helix 76	AI4	I	24	35	Right-handed alpha
Helix 77	AI5	I	42	50	Right-handed alpha
Helix 78	AI6	I	59	74	Right-handed alpha
Helix 79	AI7	I	88	102	Right-handed alpha
Helix 80	AI8	I	128	141	Right-handed alpha
Helix 81	AI9	I	154	160	Right-handed alpha
Helix 82	AJ1	I	160	174	Right-handed alpha
Helix 83	AJ2	I	186	188	Right-handed 310
Helix 84	AJ3	I	189	198	Right-handed alpha
Helix 85	AJ4	I	215	222	Right-handed alpha
Helix 86	AJ5	I	231	252	Right-handed alpha
Helix 87	AJ6	I	254	261	Right-handed 310
Helix 88	AJ7	I	263	271	Right-handed alpha
Helix 89	AJ8	I	273	283	Right-handed alpha
Helix 90	AJ9	J	2	14	Right-handed alpha
Helix 91	AK1	J	24	35	Right-handed alpha
Helix 92	AK2	J	42	50	Right-handed alpha
Helix 93	AK3	J	59	74	Right-handed alpha
Helix 94	AK4	J	88	102	Right-handed alpha
Helix 95	AK5	J	128	141	Right-handed alpha
Helix 96	AK6	J	154	174	Right-handed alpha
Helix 97	AK7	J	186	188	Right-handed 310
Helix 98	AK8	J	189	198	Right-handed alpha
Helix 99	AK9	J	215	222	Right-handed alpha
Helix 100	AL1	J	231	252	Right-handed alpha
Helix 101	AL2	J	254	261	Right-handed 310
Helix 102	AL3	J	263	271	Right-handed alpha
Helix 103	AL4	J	273	283	Right-handed alpha
Helix 104	AL5	L	2	14	Right-handed alpha
Helix 105	AL6	L	24	35	Right-handed alpha
Helix 106	AL7	L	42	50	Right-handed alpha
Helix 107	AL8	L	59	74	Right-handed alpha
Helix 108	AL9	L	88	102	Right-handed alpha
Helix 109	AM1	L	128	141	Right-handed alpha
Helix 110	AM2	L	154	174	Right-handed alpha
Helix 111	AM3	L	186	188	Right-handed 310
Helix 112	AM4	L	189	198	Right-handed alpha
Helix 113	AM5	L	215	222	Right-handed alpha
Helix 114	AM6	L	231	252	Right-handed alpha
Helix 115	AM7	L	254	261	Right-handed 310
Helix 116	AM8	L	263	271	Right-handed alpha
Helix 117	AM9	L	273	283	Right-handed alpha

There are 8 sheets in PDB entry 9HRA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	21	first strand
Strand 2	A	38	41	parallel
Strand 3	A	78	81	parallel
Strand 4	A	106	110	parallel
Strand 5	A	148	153	parallel
Strand 6	A	178	181	parallel
Strand 7	A	201	204	parallel
Strand 8	A	226	229	parallel
Strand 9	A	17	21	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	38	41	parallel
Strand 3	B	78	81	parallel
Strand 4	B	106	110	parallel
Strand 5	B	148	153	parallel
Strand 6	B	178	181	parallel
Strand 7	B	201	204	parallel
Strand 8	B	226	229	parallel
Strand 9	B	17	21	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	21	first strand
Strand 2	D	38	41	parallel
Strand 3	D	78	81	parallel
Strand 4	D	106	110	parallel
Strand 5	D	148	153	parallel
Strand 6	D	178	181	parallel
Strand 7	D	201	204	parallel
Strand 8	D	226	229	parallel
Strand 9	D	17	21	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	21	first strand
Strand 2	F	38	41	parallel
Strand 3	F	78	81	parallel
Strand 4	F	106	110	parallel
Strand 5	F	148	153	parallel
Strand 6	F	178	181	parallel
Strand 7	F	201	204	parallel
Strand 8	F	226	229	parallel
Strand 9	F	17	21	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	21	first strand
Strand 2	G	38	41	parallel
Strand 3	G	78	81	parallel
Strand 4	G	106	110	parallel
Strand 5	G	148	153	parallel
Strand 6	G	178	181	parallel
Strand 7	G	201	204	parallel
Strand 8	G	226	229	parallel
Strand 9	G	17	21	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	21	first strand
Strand 2	I	38	41	parallel
Strand 3	I	78	81	parallel
Strand 4	I	106	110	parallel
Strand 5	I	148	153	parallel
Strand 6	I	178	181	parallel
Strand 7	I	201	204	parallel
Strand 8	I	226	229	parallel
Strand 9	I	17	21	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	17	21	first strand
Strand 2	J	38	41	parallel
Strand 3	J	78	81	parallel
Strand 4	J	106	110	parallel
Strand 5	J	148	153	parallel
Strand 6	J	178	181	parallel
Strand 7	J	201	204	parallel
Strand 8	J	226	229	parallel
Strand 9	J	17	21	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	21	first strand
Strand 2	L	38	41	parallel
Strand 3	L	78	81	parallel
Strand 4	L	106	110	parallel
Strand 5	L	148	153	parallel
Strand 6	L	178	181	parallel
Strand 7	L	201	204	parallel
Strand 8	L	226	229	parallel
Strand 9	L	17	21	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HRA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HRA