Analysis of interatomic Contacts of Structural Units in PDB entry:
9HRP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HRP entry

There are 4 chains in PDB entry 9HRP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 3	SER 346
B	ASN 2	SER 346
C	ILE 3	SER 346
D	ILE 3	SER 346

There are 77 helices in PDB entry 9HRP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	26	Right-handed 310
Helix 2	AA2	A	27	33	Right-handed alpha
Helix 3	AA3	A	48	54	Right-handed alpha
Helix 4	AA4	A	54	65	Right-handed alpha
Helix 5	AA5	A	66	71	Right-handed 310
Helix 6	AA6	A	83	90	Right-handed alpha
Helix 7	AA7	A	107	117	Right-handed alpha
Helix 8	AA8	A	129	145	Right-handed alpha
Helix 9	AA9	A	147	170	Right-handed alpha
Helix 10	AB1	A	171	172	Right-handed 310
Helix 11	AB2	A	173	177	Right-handed 310
Helix 12	AB3	A	188	192	Right-handed 310
Helix 13	AB4	A	201	208	Right-handed alpha
Helix 14	AB5	A	226	234	Right-handed alpha
Helix 15	AB6	A	260	273	Right-handed alpha
Helix 16	AB7	A	276	279	Right-handed 310
Helix 17	AB8	A	280	285	Right-handed alpha
Helix 18	AB9	A	294	300	Right-handed 310
Helix 19	AC1	A	301	313	Right-handed alpha
Helix 20	AC2	A	321	334	Right-handed alpha
Helix 21	AC3	B	24	26	Right-handed 310
Helix 22	AC4	B	27	33	Right-handed alpha
Helix 23	AC5	B	48	54	Right-handed alpha
Helix 24	AC6	B	54	65	Right-handed alpha
Helix 25	AC7	B	66	71	Right-handed 310
Helix 26	AC8	B	83	90	Right-handed alpha
Helix 27	AC9	B	107	117	Right-handed alpha
Helix 28	AD1	B	129	145	Right-handed alpha
Helix 29	AD2	B	147	170	Right-handed alpha
Helix 30	AD3	B	171	172	Right-handed 310
Helix 31	AD4	B	173	177	Right-handed 310
Helix 32	AD5	B	200	208	Right-handed alpha
Helix 33	AD6	B	226	234	Right-handed alpha
Helix 34	AD7	B	260	273	Right-handed alpha
Helix 35	AD8	B	276	279	Right-handed 310
Helix 36	AD9	B	280	285	Right-handed alpha
Helix 37	AE1	B	294	300	Right-handed 310
Helix 38	AE2	B	301	313	Right-handed alpha
Helix 39	AE3	B	321	334	Right-handed alpha
Helix 40	AE4	C	24	26	Right-handed 310
Helix 41	AE5	C	27	33	Right-handed alpha
Helix 42	AE6	C	48	54	Right-handed alpha
Helix 43	AE7	C	54	65	Right-handed alpha
Helix 44	AE8	C	66	71	Right-handed 310
Helix 45	AE9	C	83	90	Right-handed alpha
Helix 46	AF1	C	107	117	Right-handed alpha
Helix 47	AF2	C	129	145	Right-handed alpha
Helix 48	AF3	C	147	170	Right-handed alpha
Helix 49	AF4	C	171	172	Right-handed 310
Helix 50	AF5	C	173	177	Right-handed 310
Helix 51	AF6	C	201	208	Right-handed alpha
Helix 52	AF7	C	226	234	Right-handed alpha
Helix 53	AF8	C	260	273	Right-handed alpha
Helix 54	AF9	C	276	279	Right-handed 310
Helix 55	AG1	C	280	285	Right-handed alpha
Helix 56	AG2	C	294	300	Right-handed 310
Helix 57	AG3	C	301	313	Right-handed alpha
Helix 58	AG4	C	321	334	Right-handed alpha
Helix 59	AG5	D	24	26	Right-handed 310
Helix 60	AG6	D	27	33	Right-handed alpha
Helix 61	AG7	D	48	54	Right-handed alpha
Helix 62	AG8	D	54	65	Right-handed alpha
Helix 63	AG9	D	66	71	Right-handed 310
Helix 64	AH1	D	83	90	Right-handed alpha
Helix 65	AH2	D	107	117	Right-handed alpha
Helix 66	AH3	D	129	145	Right-handed alpha
Helix 67	AH4	D	147	170	Right-handed alpha
Helix 68	AH5	D	171	172	Right-handed 310
Helix 69	AH6	D	173	177	Right-handed 310
Helix 70	AH7	D	200	208	Right-handed alpha
Helix 71	AH8	D	226	234	Right-handed alpha
Helix 72	AH9	D	260	273	Right-handed alpha
Helix 73	AI1	D	276	279	Right-handed 310
Helix 74	AI2	D	280	285	Right-handed alpha
Helix 75	AI3	D	294	300	Right-handed 310
Helix 76	AI4	D	301	313	Right-handed alpha
Helix 77	AI5	D	321	334	Right-handed alpha

There are 13 sheets in PDB entry 9HRP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	20	22	parallel
Strand 3	A	94	98	parallel
Strand 4	A	121	124	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	179	183	parallel
Strand 3	A	237	242	parallel
Strand 4	A	288	292	parallel
Strand 5	A	343	345	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	222	224	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	10	11	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	46	first strand
Strand 2	B	20	22	parallel
Strand 3	B	94	98	parallel
Strand 4	B	121	124	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	212	first strand
Strand 2	B	179	183	parallel
Strand 3	B	237	242	parallel
Strand 4	B	288	292	parallel
Strand 5	B	343	345	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	222	224	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	43	47	parallel
Strand 3	C	20	22	parallel
Strand 4	C	94	98	parallel
Strand 5	C	121	124	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	212	first strand
Strand 2	C	179	183	parallel
Strand 3	C	237	242	parallel
Strand 4	C	288	292	parallel
Strand 5	C	343	345	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	222	224	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	46	first strand
Strand 2	D	20	22	parallel
Strand 3	D	94	98	parallel
Strand 4	D	121	124	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	212	first strand
Strand 2	D	179	183	parallel
Strand 3	D	237	242	parallel
Strand 4	D	288	292	parallel
Strand 5	D	343	345	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	196	first strand
Strand 2	D	222	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HRP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HRP