Analysis of interatomic Contacts of Structural Units in PDB entry:
9HUH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HUH entry

There are 2 chains in PDB entry 9HUH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	PRO 663
B	ALA 2	PRO 663

There are 30 helices in PDB entry 9HUH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	173	180	Right-handed alpha
Helix 2	AA2	A	192	196	Right-handed 310
Helix 3	AA3	A	206	209	Right-handed 310
Helix 4	AA4	A	316	330	Right-handed alpha
Helix 5	AA5	A	402	408	Right-handed 310
Helix 6	AA6	A	444	454	Right-handed alpha
Helix 7	AA7	A	471	474	Right-handed 310
Helix 8	AA8	A	494	507	Right-handed alpha
Helix 9	AA9	A	525	531	Right-handed alpha
Helix 10	AB1	A	534	557	Right-handed alpha
Helix 11	AB2	A	560	562	Right-handed 310
Helix 12	AB3	A	575	577	Right-handed 310
Helix 13	AB4	A	611	620	Right-handed alpha
Helix 14	AB5	A	621	624	Right-handed 310
Helix 15	AB6	A	657	661	Right-handed 310
Helix 16	AB7	B	173	178	Right-handed alpha
Helix 17	AB8	B	192	195	Right-handed 310
Helix 18	AB9	B	207	209	Right-handed 310
Helix 19	AC1	B	315	330	Right-handed alpha
Helix 20	AC2	B	402	408	Right-handed 310
Helix 21	AC3	B	444	454	Right-handed alpha
Helix 22	AC4	B	471	474	Right-handed 310
Helix 23	AC5	B	494	506	Right-handed alpha
Helix 24	AC6	B	526	531	Right-handed alpha
Helix 25	AC7	B	532	554	Right-handed alpha
Helix 26	AC8	B	560	562	Right-handed 310
Helix 27	AC9	B	575	577	Right-handed 310
Helix 28	AD1	B	610	621	Right-handed alpha
Helix 29	AD2	B	622	624	Right-handed 310
Helix 30	AD3	B	657	661	Right-handed 310

There are 25 sheets in PDB entry 9HUH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	25	28	parallel
Strand 3	A	75	80	anti-parallel
Strand 4	A	48	53	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	104	110	parallel
Strand 3	A	90	96	anti-parallel
Strand 4	A	42	43	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	112	118	parallel
Strand 3	A	183	189	anti-parallel
Strand 4	A	243	253	anti-parallel
Strand 5	A	211	216	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	68	69	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	282	293	parallel
Strand 3	A	264	273	anti-parallel
Strand 4	A	199	203	anti-parallel
Strand 5	A	235	237	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	305	308	parallel
Strand 3	A	649	651	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	356	first strand
Strand 2	A	365	368	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	428	432	anti-parallel
Strand 3	A	460	463	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	418	first strand
Strand 2	A	421	423	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	480	first strand
Strand 2	A	487	493	anti-parallel
Strand 3	A	564	568	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	574	first strand
Strand 2	A	578	581	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	591	first strand
Strand 2	A	595	599	anti-parallel
Strand 3	A	626	630	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	609	610	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	25	28	parallel
Strand 3	B	76	80	anti-parallel
Strand 4	B	48	52	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	16	first strand
Strand 2	B	104	109	parallel
Strand 3	B	91	96	anti-parallel
Strand 4	B	42	43	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	20	first strand
Strand 2	B	112	118	parallel
Strand 3	B	183	189	anti-parallel
Strand 4	B	243	253	anti-parallel
Strand 5	B	211	215	anti-parallel
Strand 6	B	226	227	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	150	first strand
Strand 2	B	282	293	parallel
Strand 3	B	264	273	anti-parallel
Strand 4	B	197	202	anti-parallel
Strand 5	B	235	237	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	334	first strand
Strand 2	B	305	308	parallel
Strand 3	B	649	651	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	365	369	anti-parallel
Strand 3	B	391	392	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	428	432	anti-parallel
Strand 3	B	460	463	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	418	first strand
Strand 2	B	421	423	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	480	first strand
Strand 2	B	487	493	anti-parallel
Strand 3	B	564	568	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	514	first strand
Strand 2	B	524	525	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	571	573	first strand
Strand 2	B	579	581	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	599	first strand
Strand 2	B	627	630	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HUH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HUH