Analysis of interatomic Contacts of Structural Units in PDB entry:
9HUJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HUJ entry

There are 4 chains in PDB entry 9HUJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 4	PRO 663
B	ALA 2	PRO 663
C	ALA 2	PRO 663
D	ALA 2	PRO 663

There are 46 helices in PDB entry 9HUJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	317	330	Right-handed alpha
Helix 2	AA2	A	406	408	Right-handed 310
Helix 3	AA3	A	444	454	Right-handed alpha
Helix 4	AA4	A	471	474	Right-handed 310
Helix 5	AA5	A	494	506	Right-handed alpha
Helix 6	AA6	A	525	532	Right-handed alpha
Helix 7	AA7	A	534	558	Right-handed alpha
Helix 8	AA8	A	560	562	Right-handed 310
Helix 9	AA9	A	575	577	Right-handed 310
Helix 10	AB1	A	611	621	Right-handed alpha
Helix 11	AB2	A	622	624	Right-handed 310
Helix 12	AB3	B	174	178	Right-handed alpha
Helix 13	AB4	B	192	195	Right-handed 310
Helix 14	AB5	B	207	209	Right-handed 310
Helix 15	AB6	B	317	329	Right-handed alpha
Helix 16	AB7	B	444	454	Right-handed alpha
Helix 17	AB8	B	495	507	Right-handed alpha
Helix 18	AB9	B	525	530	Right-handed alpha
Helix 19	AC1	B	532	557	Right-handed alpha
Helix 20	AC2	B	611	621	Right-handed alpha
Helix 21	AC3	B	622	624	Right-handed 310
Helix 22	AC4	B	657	661	Right-handed 310
Helix 23	AC5	C	28	33	Right-handed 310
Helix 24	AC6	C	204	209	Right-handed alpha
Helix 25	AC7	C	321	326	Right-handed alpha
Helix 26	AC8	C	327	331	Right-handed 310
Helix 27	AC9	C	445	453	Right-handed alpha
Helix 28	AD1	C	493	497	Right-handed 310
Helix 29	AD2	C	498	503	Right-handed alpha
Helix 30	AD3	C	504	508	Right-handed 310
Helix 31	AD4	C	525	531	Right-handed alpha
Helix 32	AD5	C	534	547	Right-handed alpha
Helix 33	AD6	C	549	558	Right-handed alpha
Helix 34	AD7	C	610	618	Right-handed alpha
Helix 35	AD8	D	29	33	Right-handed 310
Helix 36	AD9	D	174	179	Right-handed alpha
Helix 37	AE1	D	204	209	Right-handed alpha
Helix 38	AE2	D	327	331	Right-handed 310
Helix 39	AE3	D	444	453	Right-handed alpha
Helix 40	AE4	D	496	507	Right-handed alpha
Helix 41	AE5	D	537	543	Right-handed alpha
Helix 42	AE6	D	545	556	Right-handed alpha
Helix 43	AE7	D	612	617	Right-handed alpha
Helix 44	AE8	D	618	619	Right-handed 310
Helix 45	AE9	D	620	624	Right-handed 310
Helix 46	AF1	D	657	661	Right-handed 310

There are 28 sheets in PDB entry 9HUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	25	28	parallel
Strand 3	A	76	80	anti-parallel
Strand 4	A	48	52	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	104	118	parallel
Strand 3	A	90	96	anti-parallel
Strand 4	A	43	44	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	104	118	parallel
Strand 3	A	181	189	anti-parallel
Strand 4	A	243	253	anti-parallel
Strand 5	A	211	215	anti-parallel
Strand 6	A	227	229	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	282	293	parallel
Strand 3	A	264	273	anti-parallel
Strand 4	A	197	203	anti-parallel
Strand 5	A	235	238	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	353	359	anti-parallel
Strand 3	A	362	368	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	305	308	parallel
Strand 3	A	649	651	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	428	430	anti-parallel
Strand 3	A	459	461	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	418	first strand
Strand 2	A	421	423	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	480	first strand
Strand 2	A	487	493	anti-parallel
Strand 3	A	564	568	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	573	first strand
Strand 2	A	579	581	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	592	first strand
Strand 2	A	595	599	anti-parallel
Strand 3	A	627	630	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	20	first strand
Strand 2	B	106	118	parallel
Strand 3	B	90	94	anti-parallel
Strand 4	B	42	43	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	20	first strand
Strand 2	B	106	118	parallel
Strand 3	B	183	188	anti-parallel
Strand 4	B	245	253	anti-parallel
Strand 5	B	211	215	anti-parallel
Strand 6	B	227	229	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	78	80	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	150	first strand
Strand 2	B	282	293	parallel
Strand 3	B	264	273	anti-parallel
Strand 4	B	197	203	anti-parallel
Strand 5	B	235	238	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	305	310	parallel
Strand 3	B	648	651	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	358	first strand
Strand 2	B	363	369	anti-parallel
Strand 3	B	391	392	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	412	first strand
Strand 2	B	428	432	anti-parallel
Strand 3	B	459	463	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	417	first strand
Strand 2	B	422	423	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	480	first strand
Strand 2	B	487	493	anti-parallel
Strand 3	B	564	568	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	592	first strand
Strand 2	B	595	599	anti-parallel
Strand 3	B	628	630	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	77	78	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	249	251	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	432	first strand
Strand 2	C	460	463	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	310	first strand
Strand 2	D	647	651	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	418	first strand
Strand 2	D	421	423	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	432	first strand
Strand 2	D	460	463	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	491	493	first strand
Strand 2	D	566	568	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HUJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HUJ