Analysis of interatomic Contacts of Structural Units in PDB entry:
9HUM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HUM entry

There are 6 chains in PDB entry 9HUM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 8	ARG 352
B	PRO 6	SER 584
C	PRO 6	SER 584
D	ASN 11	ARG 352
E	PRO 6	SER 584
P	GLN 1	VAL 510

There are 57 helices in PDB entry 9HUM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	22	Right-handed alpha
Helix 2	AA2	A	89	95	Right-handed 310
Helix 3	AA3	A	147	150	Right-handed 310
Helix 4	AA4	A	225	232	Right-handed alpha
Helix 5	AA5	A	232	246	Right-handed alpha
Helix 6	AA6	A	247	249	Right-handed 310
Helix 7	AA7	A	253	275	Right-handed alpha
Helix 8	AA8	A	286	316	Right-handed alpha
Helix 9	AA9	A	324	350	Right-handed alpha
Helix 10	AB1	B	9	21	Right-handed alpha
Helix 11	AB2	B	69	73	Right-handed 310
Helix 12	AB3	B	84	91	Right-handed 310
Helix 13	AB4	B	139	143	Right-handed 310
Helix 14	AB5	B	170	173	Right-handed 310
Helix 15	AB6	B	177	181	Right-handed 310
Helix 16	AB7	B	218	225	Right-handed alpha
Helix 17	AB8	B	225	238	Right-handed alpha
Helix 18	AB9	B	239	241	Right-handed 310
Helix 19	AC1	B	246	270	Right-handed alpha
Helix 20	AC2	B	279	307	Right-handed alpha
Helix 21	AC3	B	550	582	Right-handed alpha
Helix 22	AC4	C	8	21	Right-handed alpha
Helix 23	AC5	C	70	73	Right-handed 310
Helix 24	AC6	C	84	91	Right-handed 310
Helix 25	AC7	C	139	145	Right-handed 310
Helix 26	AC8	C	170	173	Right-handed 310
Helix 27	AC9	C	177	181	Right-handed 310
Helix 28	AD1	C	218	225	Right-handed alpha
Helix 29	AD2	C	225	237	Right-handed alpha
Helix 30	AD3	C	238	241	Right-handed 310
Helix 31	AD4	C	246	272	Right-handed alpha
Helix 32	AD5	C	279	307	Right-handed alpha
Helix 33	AD6	C	550	584	Right-handed alpha
Helix 34	AD7	D	12	26	Right-handed alpha
Helix 35	AD8	D	75	78	Right-handed 310
Helix 36	AD9	D	89	95	Right-handed 310
Helix 37	AE1	D	147	150	Right-handed 310
Helix 38	AE2	D	177	179	Right-handed 310
Helix 39	AE3	D	185	188	Right-handed 310
Helix 40	AE4	D	225	232	Right-handed alpha
Helix 41	AE5	D	232	244	Right-handed alpha
Helix 42	AE6	D	253	277	Right-handed alpha
Helix 43	AE7	D	288	315	Right-handed alpha
Helix 44	AE8	D	320	323	Right-handed 310
Helix 45	AE9	D	324	350	Right-handed alpha
Helix 46	AF1	E	7	21	Right-handed alpha
Helix 47	AF2	E	84	91	Right-handed 310
Helix 48	AF3	E	139	143	Right-handed 310
Helix 49	AF4	E	170	173	Right-handed 310
Helix 50	AF5	E	218	225	Right-handed alpha
Helix 51	AF6	E	225	237	Right-handed alpha
Helix 52	AF7	E	238	241	Right-handed 310
Helix 53	AF8	E	246	270	Right-handed alpha
Helix 54	AF9	E	279	307	Right-handed alpha
Helix 55	AG1	E	553	584	Right-handed alpha
Helix 56	AG2	P	474	478	Right-handed 310
Helix 57	AG3	P	495	497	Right-handed 310

There are 18 sheets in PDB entry 9HUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	119	124	anti-parallel
Strand 3	A	128	140	anti-parallel
Strand 4	A	61	73	anti-parallel
Strand 5	A	41	56	anti-parallel
Strand 6	A	169	173	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	111	first strand
Strand 2	A	128	140	anti-parallel
Strand 3	A	61	73	anti-parallel
Strand 4	A	41	56	anti-parallel
Strand 5	A	181	183	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	152	161	anti-parallel
Strand 3	A	210	223	anti-parallel
Strand 4	A	193	207	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	124	135	anti-parallel
Strand 3	B	56	67	anti-parallel
Strand 4	B	36	51	anti-parallel
Strand 5	B	164	168	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	124	135	anti-parallel
Strand 3	B	56	67	anti-parallel
Strand 4	B	36	51	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	203	216	anti-parallel
Strand 4	B	186	200	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	123	135	anti-parallel
Strand 4	C	56	68	anti-parallel
Strand 5	C	36	51	anti-parallel
Strand 6	C	164	168	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	106	first strand
Strand 2	C	123	135	anti-parallel
Strand 3	C	56	68	anti-parallel
Strand 4	C	36	51	anti-parallel
Strand 5	C	175	176	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	147	156	anti-parallel
Strand 3	C	204	216	anti-parallel
Strand 4	C	186	199	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	87	first strand
Strand 2	D	122	124	anti-parallel
Strand 3	D	128	140	anti-parallel
Strand 4	D	61	73	anti-parallel
Strand 5	D	41	56	anti-parallel
Strand 6	D	169	173	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	111	first strand
Strand 2	D	128	140	anti-parallel
Strand 3	D	61	73	anti-parallel
Strand 4	D	41	56	anti-parallel
Strand 5	D	181	183	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	103	first strand
Strand 2	D	152	161	anti-parallel
Strand 3	D	211	222	anti-parallel
Strand 4	D	197	206	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	83	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	123	135	anti-parallel
Strand 4	E	56	68	anti-parallel
Strand 5	E	36	51	anti-parallel
Strand 6	E	164	168	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	106	first strand
Strand 2	E	123	135	anti-parallel
Strand 3	E	56	68	anti-parallel
Strand 4	E	36	51	anti-parallel
Strand 5	E	175	176	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	147	156	anti-parallel
Strand 3	E	203	216	anti-parallel
Strand 4	E	186	200	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	2	7	first strand
Strand 2	P	405	413	anti-parallel
Strand 3	P	465	470	anti-parallel
Strand 4	P	455	460	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	11	first strand
Strand 2	P	506	509	parallel
Strand 3	P	479	486	anti-parallel
Strand 4	P	420	426	anti-parallel
Strand 5	P	433	439	anti-parallel
Strand 6	P	445	447	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	11	first strand
Strand 2	P	506	509	parallel
Strand 3	P	479	486	anti-parallel
Strand 4	P	499	502	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HUM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HUM