Analysis of interatomic Contacts of Structural Units in PDB entry:
9HVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HVF entry

There are 5 chains in PDB entry 9HVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	MET 1	GLY 445
A	GLY 474	ALA 500
C	ALA 2	LYS 24
D	GLY 7	ASP 472
B	GLN 187	ASP 315

There are 27 helices in PDB entry 9HVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	15	19	Right-handed 310
Helix 2	AA2	E	29	33	Right-handed 310
Helix 3	AA3	E	34	35	Right-handed 310
Helix 4	AA4	E	36	47	Right-handed alpha
Helix 5	AA5	E	56	63	Right-handed alpha
Helix 6	AA6	E	85	93	Right-handed alpha
Helix 7	AA7	E	114	125	Right-handed alpha
Helix 8	AA8	E	184	189	Right-handed 310
Helix 9	AA9	E	208	218	Right-handed alpha
Helix 10	AB1	E	227	236	Right-handed alpha
Helix 11	AB2	E	239	244	Right-handed alpha
Helix 12	AB3	E	262	266	Right-handed 310
Helix 13	AB4	E	316	326	Right-handed alpha
Helix 14	AB5	E	327	334	Right-handed alpha
Helix 15	AB6	C	9	23	Right-handed alpha
Helix 16	AB7	D	32	37	Right-handed alpha
Helix 17	AB8	D	53	62	Right-handed alpha
Helix 18	AB9	D	137	147	Right-handed alpha
Helix 19	AC1	D	167	181	Right-handed alpha
Helix 20	AC2	D	196	212	Right-handed alpha
Helix 21	AC3	D	232	242	Right-handed alpha
Helix 22	AC4	D	270	274	Right-handed 310
Helix 23	AC5	D	344	349	Right-handed alpha
Helix 24	AC6	B	204	216	Right-handed alpha
Helix 25	AC7	B	217	219	Right-handed 310
Helix 26	AC8	B	243	264	Right-handed alpha
Helix 27	AC9	B	279	298	Right-handed alpha

There are 12 sheets in PDB entry 9HVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	77	first strand
Strand 2	E	52	55	parallel
Strand 3	E	4	8	parallel
Strand 4	E	101	104	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	110	first strand
Strand 2	E	310	312	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	200	first strand
Strand 2	E	129	134	anti-parallel
Strand 3	E	205	206	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	200	first strand
Strand 2	E	129	134	anti-parallel
Strand 3	E	302	304	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	171	first strand
Strand 2	E	157	160	anti-parallel
Strand 3	E	196	197	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	362	363	first strand
Strand 2	E	379	380	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	88	first strand
Strand 2	D	128	134	anti-parallel
Strand 3	D	42	47	parallel
Strand 4	D	154	157	parallel
Strand 5	D	185	190	parallel
Strand 6	D	221	224	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	B	300	301	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	123	124	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	322	first strand
Strand 2	D	337	341	anti-parallel
Strand 3	D	278	285	anti-parallel
Strand 4	D	255	262	anti-parallel
Strand 5	D	358	359	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	377	first strand
Strand 2	D	424	428	anti-parallel
Strand 3	D	412	420	anti-parallel
Strand 4	D	403	407	anti-parallel
Strand 5	D	440	447	anti-parallel
Strand 6	D	450	463	anti-parallel
Strand 7	D	370	377	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	231	first strand
Strand 2	B	234	241	anti-parallel
Strand 3	B	189	199	anti-parallel
Strand 4	B	267	277	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HVF