Analysis of interatomic Contacts of Structural Units in PDB entry:
9HVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HVH entry

There are 2 chains in PDB entry 9HVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 263
B
 VAL 3ILE 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9HVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 25Right-handed alpha
Helix 2
AA2
A
26 37Right-handed alpha
Helix 3
AA3
A
42 47Right-handed alpha
Helix 4
AA4
A
73 85Right-handed alpha
Helix 5
AA5
A
100 112Right-handed alpha
Helix 6
AA6
A
124 134Right-handed alpha
Helix 7
AA7
A
147 161Right-handed alpha
Helix 8
AA8
A
171 181Right-handed alpha
Helix 9
AA9
A
200 208Right-handed alpha
Helix 10
AB1
A
224 234Right-handed alpha
Helix 11
AB2
A
242 248Right-handed alpha
Helix 12
AB3
A
250 260Right-handed alpha
Helix 13
AB4
B
5 25Right-handed alpha
Helix 14
AB5
B
26 36Right-handed alpha
Helix 15
AB6
B
42 47Right-handed alpha
Helix 16
AB7
B
73 84Right-handed alpha
Helix 17
AB8
B
100 112Right-handed alpha
Helix 18
AB9
B
124 134Right-handed alpha
Helix 19
AC1
B
147 162Right-handed alpha
Helix 20
AC2
B
171 181Right-handed alpha
Helix 21
AC3
B
200 207Right-handed alpha
Helix 22
AC4
B
208 210Right-handed 310
Helix 23
AC5
B
224 234Right-handed alpha
Helix 24
AC6
B
242 247Right-handed alpha
Helix 25
AC7
B
250 260Right-handed alpha
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There are 3 sheets in PDB entry 9HVH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 60first strand
Strand 2
A
88 93parallel
Strand 3
A
116 119parallel
Strand 4
A
138 142parallel
Strand 5
A
164 169parallel
Strand 6
A
185 189parallel
Strand 7
A
215 219parallel
Strand 8
A
238 241parallel
Strand 9
A
53 60parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
197 198anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 59first strand
Strand 2
B
88 92parallel
Strand 3
B
116 119parallel
Strand 4
B
138 142parallel
Strand 5
B
164 169parallel
Strand 6
B
185 189parallel
Strand 7
B
215 219parallel
Strand 8
B
238 241parallel
Strand 9
B
53 59parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il