Analysis of interatomic Contacts of Structural Units in PDB entry:
9HVK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HVK entry

There are 6 chains in PDB entry 9HVK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 56	ALA 750
E	HIS 56	ALA 750
H	GLN 1	SER 126
Q	GLN 1	SER 126
P	VAL 2	SER 123
M	VAL 2	SER 123

There are 51 helices in PDB entry 9HVK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	65	Right-handed alpha
Helix 2	AA2	A	66	78	Right-handed alpha
Helix 3	AA3	A	86	104	Right-handed alpha
Helix 4	AA4	A	181	191	Right-handed alpha
Helix 5	AA5	A	209	221	Right-handed alpha
Helix 6	AA6	A	230	235	Right-handed alpha
Helix 7	AA7	A	299	307	Right-handed alpha
Helix 8	AA8	A	334	338	Right-handed 310
Helix 9	AA9	A	388	409	Right-handed alpha
Helix 10	AB1	A	423	427	Right-handed 310
Helix 11	AB2	A	428	438	Right-handed alpha
Helix 12	AB3	A	438	445	Right-handed alpha
Helix 13	AB4	A	470	481	Right-handed alpha
Helix 14	AB5	A	492	501	Right-handed alpha
Helix 15	AB6	A	520	527	Right-handed alpha
Helix 16	AB7	A	558	565	Right-handed alpha
Helix 17	AB8	A	570	589	Right-handed alpha
Helix 18	AB9	A	596	616	Right-handed alpha
Helix 19	AC1	A	618	625	Right-handed alpha
Helix 20	AC2	A	629	653	Right-handed alpha
Helix 21	AC3	A	657	674	Right-handed alpha
Helix 22	AC4	A	705	713	Right-handed alpha
Helix 23	AC5	A	720	746	Right-handed alpha
Helix 24	AC6	E	57	63	Right-handed alpha
Helix 25	AC7	E	66	78	Right-handed alpha
Helix 26	AC8	E	86	104	Right-handed alpha
Helix 27	AC9	E	181	191	Right-handed alpha
Helix 28	AD1	E	209	220	Right-handed alpha
Helix 29	AD2	E	230	235	Right-handed alpha
Helix 30	AD3	E	299	307	Right-handed alpha
Helix 31	AD4	E	316	320	Right-handed 310
Helix 32	AD5	E	388	409	Right-handed alpha
Helix 33	AD6	E	423	427	Right-handed 310
Helix 34	AD7	E	428	438	Right-handed alpha
Helix 35	AD8	E	438	445	Right-handed alpha
Helix 36	AD9	E	470	481	Right-handed alpha
Helix 37	AE1	E	492	501	Right-handed alpha
Helix 38	AE2	E	520	527	Right-handed alpha
Helix 39	AE3	E	540	544	Right-handed 310
Helix 40	AE4	E	558	566	Right-handed alpha
Helix 41	AE5	E	570	589	Right-handed alpha
Helix 42	AE6	E	596	616	Right-handed alpha
Helix 43	AE7	E	618	625	Right-handed alpha
Helix 44	AE8	E	629	653	Right-handed alpha
Helix 45	AE9	E	657	674	Right-handed alpha
Helix 46	AF1	E	705	713	Right-handed alpha
Helix 47	AF2	E	720	746	Right-handed alpha
Helix 48	AF3	P	61	65	Right-handed 310
Helix 49	AF4	P	87	91	Right-handed 310
Helix 50	AF5	M	61	65	Right-handed 310
Helix 51	AF6	M	87	91	Right-handed 310

There are 18 sheets in PDB entry 9HVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	119	first strand
Strand 2	A	349	362	anti-parallel
Strand 3	A	414	421	anti-parallel
Strand 4	A	367	377	parallel
Strand 5	A	446	451	parallel
Strand 6	A	531	538	parallel
Strand 7	A	461	466	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	140	first strand
Strand 2	A	128	131	anti-parallel
Strand 3	A	341	344	anti-parallel
Strand 4	A	171	172	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	200	204	parallel
Strand 3	A	224	228	parallel
Strand 4	A	294	296	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	120	first strand
Strand 2	E	348	362	anti-parallel
Strand 3	E	414	421	anti-parallel
Strand 4	E	367	377	parallel
Strand 5	E	446	451	parallel
Strand 6	E	531	538	parallel
Strand 7	E	461	466	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	140	first strand
Strand 2	E	128	131	anti-parallel
Strand 3	E	341	344	anti-parallel
Strand 4	E	171	172	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	176	first strand
Strand 2	E	200	204	parallel
Strand 3	E	225	228	parallel
Strand 4	E	294	296	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	8	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	69	72	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	123	125	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	60	first strand
Strand 2	H	45	52	anti-parallel
Strand 3	H	32	39	anti-parallel
Strand 4	H	93	100	anti-parallel
Strand 5	H	116	117	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	5	8	first strand
Strand 2	Q	17	23	anti-parallel
Strand 3	Q	78	84	anti-parallel
Strand 4	Q	69	72	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	12	13	first strand
Strand 2	Q	124	125	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	58	60	first strand
Strand 2	Q	45	52	anti-parallel
Strand 3	Q	32	39	anti-parallel
Strand 4	Q	93	100	anti-parallel
Strand 5	Q	116	117	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	7	first strand
Strand 2	P	19	25	anti-parallel
Strand 3	P	78	83	anti-parallel
Strand 4	P	68	73	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	57	59	first strand
Strand 2	P	46	51	anti-parallel
Strand 3	P	35	39	anti-parallel
Strand 4	P	92	98	anti-parallel
Strand 5	P	113	114	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	57	59	first strand
Strand 2	P	46	51	anti-parallel
Strand 3	P	35	39	anti-parallel
Strand 4	P	92	98	anti-parallel
Strand 5	P	119	120	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	7	first strand
Strand 2	M	19	23	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	68	73	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	59	first strand
Strand 2	M	46	51	anti-parallel
Strand 3	M	35	39	anti-parallel
Strand 4	M	92	98	anti-parallel
Strand 5	M	113	114	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	59	first strand
Strand 2	M	46	51	anti-parallel
Strand 3	M	35	39	anti-parallel
Strand 4	M	92	98	anti-parallel
Strand 5	M	118	120	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HVK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HVK