Analysis of interatomic Contacts of Structural Units in PDB entry:
9HXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HXD entry

There are 2 chains in PDB entry 9HXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 582
B
 MET 1ASN 582
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 9HXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 14Right-handed 310
Helix 2
AA2
A
15 29Right-handed alpha
Helix 3
AA3
A
34 38Right-handed 310
Helix 4
AA4
A
43 61Right-handed alpha
Helix 5
AA5
A
66 81Right-handed alpha
Helix 6
AA6
A
82 89Right-handed alpha
Helix 7
AA7
A
92 102Right-handed alpha
Helix 8
AA8
A
107 121Right-handed alpha
Helix 9
AA9
A
122 141Right-handed alpha
Helix 10
AB1
A
143 162Right-handed alpha
Helix 11
AB2
A
164 176Right-handed alpha
Helix 12
AB3
A
187 193Right-handed alpha
Helix 13
AB4
A
211 216Right-handed alpha
Helix 14
AB5
A
216 223Right-handed alpha
Helix 15
AB6
A
235 239Right-handed 310
Helix 16
AB7
A
258 277Right-handed alpha
Helix 17
AB8
A
309 313Right-handed 310
Helix 18
AB9
A
322 329Right-handed alpha
Helix 19
AC1
A
338 356Right-handed alpha
Helix 20
AC2
A
361 374Right-handed alpha
Helix 21
AC3
A
385 399Right-handed alpha
Helix 22
AC4
A
400 417Right-handed alpha
Helix 23
AC5
A
417 426Right-handed alpha
Helix 24
AC6
A
433 443Right-handed alpha
Helix 25
AC7
A
446 458Right-handed alpha
Helix 26
AC8
A
460 474Right-handed alpha
Helix 27
AC9
A
476 507Right-handed alpha
Helix 28
AD1
A
517 538Right-handed alpha
Helix 29
AD2
A
545 565Right-handed alpha
Helix 30
AD3
A
575 581Right-handed alpha
Helix 31
AD4
B
11 14Right-handed 310
Helix 32
AD5
B
15 29Right-handed alpha
Helix 33
AD6
B
34 38Right-handed 310
Helix 34
AD7
B
43 61Right-handed alpha
Helix 35
AD8
B
66 81Right-handed alpha
Helix 36
AD9
B
82 89Right-handed alpha
Helix 37
AE1
B
92 102Right-handed alpha
Helix 38
AE2
B
107 121Right-handed alpha
Helix 39
AE3
B
122 141Right-handed alpha
Helix 40
AE4
B
143 162Right-handed alpha
Helix 41
AE5
B
164 176Right-handed alpha
Helix 42
AE6
B
187 193Right-handed alpha
Helix 43
AE7
B
211 216Right-handed alpha
Helix 44
AE8
B
216 223Right-handed alpha
Helix 45
AE9
B
235 239Right-handed 310
Helix 46
AF1
B
258 277Right-handed alpha
Helix 47
AF2
B
309 313Right-handed 310
Helix 48
AF3
B
322 329Right-handed alpha
Helix 49
AF4
B
338 356Right-handed alpha
Helix 50
AF5
B
361 374Right-handed alpha
Helix 51
AF6
B
385 399Right-handed alpha
Helix 52
AF7
B
400 417Right-handed alpha
Helix 53
AF8
B
417 426Right-handed alpha
Helix 54
AF9
B
433 443Right-handed alpha
Helix 55
AG1
B
446 458Right-handed alpha
Helix 56
AG2
B
460 474Right-handed alpha
Helix 57
AG3
B
476 507Right-handed alpha
Helix 58
AG4
B
517 538Right-handed alpha
Helix 59
AG5
B
545 565Right-handed alpha
Helix 60
AG6
B
575 581Right-handed alpha
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There are 2 sheets in PDB entry 9HXD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
247 256anti-parallel
Strand 3
A
201 210anti-parallel
Strand 4
A
288 296anti-parallel
Strand 5
A
301 304anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 227first strand
Strand 2
B
247 256anti-parallel
Strand 3
B
201 210anti-parallel
Strand 4
B
288 296anti-parallel
Strand 5
B
301 304anti-parallel
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