Analysis of interatomic Contacts of Structural Units in PDB entry:
9HXQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HXQ entry

There are 4 chains in PDB entry 9HXQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 9	LEU 730
A	GLU 9	LEU 730
C	GLU 9	LEU 730
D	GLU 9	LEU 730

There are 60 helices in PDB entry 9HXQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	9	22	Right-handed alpha
Helix 2	AA2	B	135	139	Right-handed alpha
Helix 3	AA3	B	253	255	Right-handed 310
Helix 4	AA4	B	443	447	Right-handed 310
Helix 5	AA5	B	471	475	Right-handed 310
Helix 6	AA6	B	519	529	Right-handed alpha
Helix 7	AA7	B	544	551	Right-handed alpha
Helix 8	AA8	B	558	575	Right-handed alpha
Helix 9	AA9	B	587	600	Right-handed alpha
Helix 10	AB1	B	615	620	Right-handed alpha
Helix 11	AB2	B	625	634	Right-handed alpha
Helix 12	AB3	B	644	654	Right-handed alpha
Helix 13	AB4	B	655	663	Right-handed 310
Helix 14	AB5	B	680	692	Right-handed alpha
Helix 15	AB6	B	711	730	Right-handed alpha
Helix 16	AB7	A	10	22	Right-handed alpha
Helix 17	AB8	A	135	139	Right-handed alpha
Helix 18	AB9	A	253	255	Right-handed 310
Helix 19	AC1	A	443	447	Right-handed 310
Helix 20	AC2	A	471	475	Right-handed 310
Helix 21	AC3	A	519	529	Right-handed alpha
Helix 22	AC4	A	544	551	Right-handed alpha
Helix 23	AC5	A	558	575	Right-handed alpha
Helix 24	AC6	A	587	600	Right-handed alpha
Helix 25	AC7	A	615	620	Right-handed alpha
Helix 26	AC8	A	625	634	Right-handed alpha
Helix 27	AC9	A	644	654	Right-handed alpha
Helix 28	AD1	A	655	663	Right-handed 310
Helix 29	AD2	A	680	692	Right-handed alpha
Helix 30	AD3	A	711	730	Right-handed alpha
Helix 31	AD4	C	10	22	Right-handed alpha
Helix 32	AD5	C	135	139	Right-handed alpha
Helix 33	AD6	C	253	255	Right-handed 310
Helix 34	AD7	C	443	447	Right-handed 310
Helix 35	AD8	C	471	475	Right-handed 310
Helix 36	AD9	C	519	529	Right-handed alpha
Helix 37	AE1	C	544	551	Right-handed alpha
Helix 38	AE2	C	558	575	Right-handed alpha
Helix 39	AE3	C	587	600	Right-handed alpha
Helix 40	AE4	C	615	620	Right-handed alpha
Helix 41	AE5	C	625	634	Right-handed alpha
Helix 42	AE6	C	644	654	Right-handed alpha
Helix 43	AE7	C	655	663	Right-handed 310
Helix 44	AE8	C	680	692	Right-handed alpha
Helix 45	AE9	C	711	730	Right-handed alpha
Helix 46	AF1	D	10	22	Right-handed alpha
Helix 47	AF2	D	135	139	Right-handed alpha
Helix 48	AF3	D	253	255	Right-handed 310
Helix 49	AF4	D	443	447	Right-handed 310
Helix 50	AF5	D	471	475	Right-handed 310
Helix 51	AF6	D	519	529	Right-handed alpha
Helix 52	AF7	D	544	551	Right-handed alpha
Helix 53	AF8	D	558	575	Right-handed alpha
Helix 54	AF9	D	587	600	Right-handed alpha
Helix 55	AG1	D	615	620	Right-handed alpha
Helix 56	AG2	D	625	634	Right-handed alpha
Helix 57	AG3	D	644	654	Right-handed alpha
Helix 58	AG4	D	655	663	Right-handed 310
Helix 59	AG5	D	680	692	Right-handed alpha
Helix 60	AG6	D	711	730	Right-handed alpha

There are 40 sheets in PDB entry 9HXQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	31	first strand
Strand 2	B	42	54	anti-parallel
Strand 3	B	59	71	anti-parallel
Strand 4	B	76	81	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	42	54	anti-parallel
Strand 3	B	59	71	anti-parallel
Strand 4	B	86	87	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	96	first strand
Strand 2	B	103	108	anti-parallel
Strand 3	B	119	125	anti-parallel
Strand 4	B	128	134	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	161	167	anti-parallel
Strand 3	B	222	228	anti-parallel
Strand 4	B	234	236	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	201	202	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	251	first strand
Strand 2	B	257	264	anti-parallel
Strand 3	B	280	286	anti-parallel
Strand 4	B	293	294	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	307	first strand
Strand 2	B	313	319	anti-parallel
Strand 3	B	330	335	anti-parallel
Strand 4	B	341	345	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	382	first strand
Strand 2	B	385	392	anti-parallel
Strand 3	B	398	400	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	416	first strand
Strand 2	B	419	426	anti-parallel
Strand 3	B	429	437	anti-parallel
Strand 4	B	449	453	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	468	first strand
Strand 2	B	484	491	anti-parallel
Strand 3	B	531	536	anti-parallel
Strand 4	B	502	506	parallel
Strand 5	B	581	586	parallel
Strand 6	B	606	610	parallel
Strand 7	B	667	672	parallel
Strand 8	B	697	702	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	31	first strand
Strand 2	A	42	54	anti-parallel
Strand 3	A	59	71	anti-parallel
Strand 4	A	76	81	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	42	54	anti-parallel
Strand 3	A	59	71	anti-parallel
Strand 4	A	86	87	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	96	first strand
Strand 2	A	103	108	anti-parallel
Strand 3	A	119	125	anti-parallel
Strand 4	A	128	134	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	161	167	anti-parallel
Strand 3	A	222	228	anti-parallel
Strand 4	A	234	236	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	201	202	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	251	first strand
Strand 2	A	257	264	anti-parallel
Strand 3	A	280	286	anti-parallel
Strand 4	A	293	294	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	307	first strand
Strand 2	A	313	319	anti-parallel
Strand 3	A	330	335	anti-parallel
Strand 4	A	341	345	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	382	first strand
Strand 2	A	385	392	anti-parallel
Strand 3	A	398	400	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	416	first strand
Strand 2	A	419	426	anti-parallel
Strand 3	A	429	437	anti-parallel
Strand 4	A	449	453	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	468	first strand
Strand 2	A	484	491	anti-parallel
Strand 3	A	531	536	anti-parallel
Strand 4	A	502	506	parallel
Strand 5	A	581	586	parallel
Strand 6	A	606	610	parallel
Strand 7	A	667	672	parallel
Strand 8	A	697	702	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	31	first strand
Strand 2	C	42	54	anti-parallel
Strand 3	C	59	71	anti-parallel
Strand 4	C	76	81	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	42	54	anti-parallel
Strand 3	C	59	71	anti-parallel
Strand 4	C	86	87	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	96	first strand
Strand 2	C	103	108	anti-parallel
Strand 3	C	119	125	anti-parallel
Strand 4	C	128	134	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	161	167	anti-parallel
Strand 3	C	222	228	anti-parallel
Strand 4	C	234	236	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	174	first strand
Strand 2	C	201	202	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	251	first strand
Strand 2	C	257	264	anti-parallel
Strand 3	C	280	286	anti-parallel
Strand 4	C	293	294	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	307	first strand
Strand 2	C	313	319	anti-parallel
Strand 3	C	330	335	anti-parallel
Strand 4	C	341	345	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	382	first strand
Strand 2	C	385	392	anti-parallel
Strand 3	C	398	400	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	416	first strand
Strand 2	C	419	426	anti-parallel
Strand 3	C	429	437	anti-parallel
Strand 4	C	449	453	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	468	first strand
Strand 2	C	484	491	anti-parallel
Strand 3	C	531	536	anti-parallel
Strand 4	C	502	506	parallel
Strand 5	C	581	586	parallel
Strand 6	C	606	610	parallel
Strand 7	C	667	672	parallel
Strand 8	C	697	702	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	31	first strand
Strand 2	D	42	54	anti-parallel
Strand 3	D	59	71	anti-parallel
Strand 4	D	76	81	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	D	42	54	anti-parallel
Strand 3	D	59	71	anti-parallel
Strand 4	D	86	87	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	96	first strand
Strand 2	D	103	108	anti-parallel
Strand 3	D	119	125	anti-parallel
Strand 4	D	128	134	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	155	first strand
Strand 2	D	161	167	anti-parallel
Strand 3	D	222	228	anti-parallel
Strand 4	D	234	236	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	174	first strand
Strand 2	D	201	202	parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	251	first strand
Strand 2	D	257	264	anti-parallel
Strand 3	D	280	286	anti-parallel
Strand 4	D	293	294	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	307	first strand
Strand 2	D	313	319	anti-parallel
Strand 3	D	330	335	anti-parallel
Strand 4	D	341	345	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	382	first strand
Strand 2	D	385	392	anti-parallel
Strand 3	D	398	400	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	416	first strand
Strand 2	D	419	426	anti-parallel
Strand 3	D	429	437	anti-parallel
Strand 4	D	449	453	anti-parallel

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There are 8 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	468	first strand
Strand 2	D	484	491	anti-parallel
Strand 3	D	531	536	anti-parallel
Strand 4	D	502	506	parallel
Strand 5	D	581	586	parallel
Strand 6	D	606	610	parallel
Strand 7	D	667	672	parallel
Strand 8	D	697	702	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HXQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HXQ