Analysis of interatomic Contacts of Structural Units in PDB entry:
9HYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HYD entry

There is 1 chain in PDB entry 9HYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 26GLY 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9HYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 42Right-handed alpha
Helix 2
AA2
A
91 96Right-handed 310
Helix 3
AA3
A
97 104Right-handed alpha
Helix 4
AA4
A
115 119Right-handed 310
Helix 5
AA5
A
120 137Right-handed alpha
Helix 6
AA6
A
141 143Right-handed 310
Helix 7
AA7
A
156 169Right-handed alpha
Helix 8
AA8
A
210 218Right-handed alpha
Helix 9
AA9
A
235 239Right-handed 310
Helix 10
AB1
A
241 257Right-handed alpha
Helix 11
AB2
A
259 261Right-handed 310
Helix 12
AB3
A
262 267Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9HYD.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 56first strand
Strand 2
A
65 71anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
79 85parallel
Strand 5
A
145 155parallel
Strand 6
A
172 178parallel
Strand 7
A
193 199parallel
Strand 8
A
224 229parallel
Strand 9
A
278 284anti-parallel
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