Analysis of interatomic Contacts of Structural Units in PDB entry:
9HYQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HYQ entry

There are 2 chains in PDB entry 9HYQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 21	GLU 802
B	GLN 21	ILE 801

There are 50 helices in PDB entry 9HYQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	37	Right-handed 310
Helix 2	AA2	A	153	158	Right-handed 310
Helix 3	AA3	A	198	207	Right-handed alpha
Helix 4	AA4	A	209	216	Right-handed 310
Helix 5	AA5	A	276	292	Right-handed alpha
Helix 6	AA6	A	298	317	Right-handed alpha
Helix 7	AA7	A	347	368	Right-handed alpha
Helix 8	AA8	A	386	390	Right-handed 310
Helix 9	AA9	A	391	395	Right-handed 310
Helix 10	AB1	A	410	418	Right-handed alpha
Helix 11	AB2	A	419	421	Right-handed 310
Helix 12	AB3	A	429	438	Right-handed alpha
Helix 13	AB4	A	439	452	Right-handed alpha
Helix 14	AB5	A	469	474	Right-handed alpha
Helix 15	AB6	A	497	513	Right-handed alpha
Helix 16	AB7	A	519	542	Right-handed alpha
Helix 17	AB8	A	569	585	Right-handed alpha
Helix 18	AB9	A	590	599	Right-handed alpha
Helix 19	AC1	A	642	646	Right-handed 310
Helix 20	AC2	A	660	671	Right-handed alpha
Helix 21	AC3	A	671	678	Right-handed alpha
Helix 22	AC4	A	685	693	Right-handed alpha
Helix 23	AC5	A	697	708	Right-handed alpha
Helix 24	AC6	A	727	742	Right-handed alpha
Helix 25	AC7	A	790	795	Right-handed 310
Helix 26	AC8	B	33	37	Right-handed 310
Helix 27	AC9	B	153	158	Right-handed 310
Helix 28	AD1	B	198	207	Right-handed alpha
Helix 29	AD2	B	209	216	Right-handed 310
Helix 30	AD3	B	276	292	Right-handed alpha
Helix 31	AD4	B	298	317	Right-handed alpha
Helix 32	AD5	B	346	368	Right-handed alpha
Helix 33	AD6	B	386	390	Right-handed 310
Helix 34	AD7	B	391	395	Right-handed 310
Helix 35	AD8	B	410	418	Right-handed alpha
Helix 36	AD9	B	419	421	Right-handed 310
Helix 37	AE1	B	429	438	Right-handed alpha
Helix 38	AE2	B	439	452	Right-handed alpha
Helix 39	AE3	B	469	474	Right-handed alpha
Helix 40	AE4	B	497	513	Right-handed alpha
Helix 41	AE5	B	519	542	Right-handed alpha
Helix 42	AE6	B	569	585	Right-handed alpha
Helix 43	AE7	B	590	599	Right-handed alpha
Helix 44	AE8	B	642	646	Right-handed 310
Helix 45	AE9	B	660	671	Right-handed alpha
Helix 46	AF1	B	671	678	Right-handed alpha
Helix 47	AF2	B	685	693	Right-handed alpha
Helix 48	AF3	B	695	708	Right-handed alpha
Helix 49	AF4	B	727	742	Right-handed alpha
Helix 50	AF5	B	790	795	Right-handed 310

There are 16 sheets in PDB entry 9HYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	94	98	anti-parallel
Strand 3	A	103	108	anti-parallel
Strand 4	A	111	117	anti-parallel
Strand 5	A	123	142	anti-parallel
Strand 6	A	260	273	anti-parallel
Strand 7	A	223	231	anti-parallel
Strand 8	A	186	193	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	42	first strand
Strand 2	A	45	52	anti-parallel
Strand 3	A	55	62	anti-parallel
Strand 4	A	76	83	anti-parallel
Strand 5	A	123	142	anti-parallel
Strand 6	A	248	255	anti-parallel
Strand 7	A	235	243	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	169	170	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	323	first strand
Strand 2	A	762	768	anti-parallel
Strand 3	A	772	779	anti-parallel
Strand 4	A	782	789	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	409	first strand
Strand 2	A	461	463	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	559	first strand
Strand 2	A	563	566	anti-parallel
Strand 3	A	636	637	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	608	first strand
Strand 2	A	624	628	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	743	746	first strand
Strand 2	A	749	752	anti-parallel
Strand 3	A	797	799	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	94	98	anti-parallel
Strand 3	B	103	108	anti-parallel
Strand 4	B	111	117	anti-parallel
Strand 5	B	123	142	anti-parallel
Strand 6	B	260	273	anti-parallel
Strand 7	B	223	231	anti-parallel
Strand 8	B	186	193	anti-parallel
Strand 9	B	174	177	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	42	first strand
Strand 2	B	45	52	anti-parallel
Strand 3	B	55	62	anti-parallel
Strand 4	B	76	83	anti-parallel
Strand 5	B	123	142	anti-parallel
Strand 6	B	247	255	anti-parallel
Strand 7	B	235	244	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	169	170	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	323	first strand
Strand 2	B	762	768	anti-parallel
Strand 3	B	772	779	anti-parallel
Strand 4	B	782	789	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	409	first strand
Strand 2	B	461	463	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	559	first strand
Strand 2	B	563	566	anti-parallel
Strand 3	B	636	637	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	604	608	first strand
Strand 2	B	624	628	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	743	746	first strand
Strand 2	B	749	752	anti-parallel
Strand 3	B	797	799	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HYQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HYQ