Analysis of interatomic Contacts of Structural Units in PDB entry:
9I04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9I04 entry

There are 5 chains in PDB entry 9I04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 37	VAL 529
B	GLY 5	LEU 536
C	ALA 31	LEU 123
D	G 1	G 14
E	G 1	C 14

There are 37 helices in PDB entry 9I04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	50	Right-handed 310
Helix 2	AA2	A	58	78	Right-handed alpha
Helix 3	AA3	A	112	121	Right-handed alpha
Helix 4	AA4	A	124	132	Right-handed alpha
Helix 5	AA5	A	142	156	Right-handed alpha
Helix 6	AA6	A	179	196	Right-handed alpha
Helix 7	AA7	A	239	251	Right-handed alpha
Helix 8	AA8	A	330	339	Right-handed alpha
Helix 9	AA9	A	354	356	Right-handed 310
Helix 10	AB1	A	377	393	Right-handed alpha
Helix 11	AB2	A	455	470	Right-handed alpha
Helix 12	AB3	A	480	495	Right-handed alpha
Helix 13	AB4	A	510	519	Right-handed alpha
Helix 14	AB5	A	519	527	Right-handed alpha
Helix 15	AB6	B	17	22	Right-handed alpha
Helix 16	AB7	B	29	48	Right-handed alpha
Helix 17	AB8	B	87	96	Right-handed alpha
Helix 18	AB9	B	106	122	Right-handed alpha
Helix 19	AC1	B	146	158	Right-handed alpha
Helix 20	AC2	B	198	217	Right-handed alpha
Helix 21	AC3	B	218	222	Right-handed 310
Helix 22	AC4	B	227	231	Right-handed alpha
Helix 23	AC5	B	232	233	Right-handed 310
Helix 24	AC6	B	234	238	Right-handed 310
Helix 25	AC7	B	324	332	Right-handed alpha
Helix 26	AC8	B	352	356	Right-handed 310
Helix 27	AC9	B	370	388	Right-handed alpha
Helix 28	AD1	B	426	430	Right-handed 310
Helix 29	AD2	B	437	441	Right-handed 310
Helix 30	AD3	B	447	461	Right-handed alpha
Helix 31	AD4	B	478	482	Right-handed 310
Helix 32	AD5	B	484	500	Right-handed alpha
Helix 33	AD6	B	509	517	Right-handed alpha
Helix 34	AD7	B	519	535	Right-handed alpha
Helix 35	AD8	C	40	53	Right-handed alpha
Helix 36	AD9	C	75	89	Right-handed alpha
Helix 37	AE1	C	101	112	Right-handed alpha

There are 10 sheets in PDB entry 9I04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	109	first strand
Strand 2	A	83	88	anti-parallel
Strand 3	A	38	43	parallel
Strand 4	A	165	170	parallel
Strand 5	A	199	204	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	262	first strand
Strand 2	A	268	274	anti-parallel
Strand 3	A	366	370	anti-parallel
Strand 4	A	431	436	anti-parallel
Strand 5	A	409	416	anti-parallel
Strand 6	A	394	401	anti-parallel
Strand 7	A	344	352	anti-parallel
Strand 8	A	257	262	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	289	first strand
Strand 2	B	310	311	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	304	first strand
Strand 2	B	289	297	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	329	first strand
Strand 2	A	316	322	anti-parallel
Strand 3	B	277	280	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	84	first strand
Strand 2	B	53	59	anti-parallel
Strand 3	B	8	15	parallel
Strand 4	B	129	135	parallel
Strand 5	B	160	165	parallel
Strand 6	B	224	226	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	253	first strand
Strand 2	B	257	268	anti-parallel
Strand 3	B	357	366	anti-parallel
Strand 4	B	417	424	anti-parallel
Strand 5	B	404	412	anti-parallel
Strand 6	B	389	396	anti-parallel
Strand 7	B	339	347	anti-parallel
Strand 8	B	247	253	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	316	first strand
Strand 2	B	319	322	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	467	first strand
Strand 2	B	472	475	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	59	first strand
Strand 2	C	32	34	parallel
Strand 3	C	68	70	parallel
Strand 4	C	98	100	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9I04

Analysis of interatomic Contacts of Structural Units in PDB entry:
9I04