Analysis of interatomic Contacts of Structural Units in PDB entry:
9I1J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9I1J entry

There are 2 chains in PDB entry 9I1J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 504	GLY 5150
B	SER 0	PRO 152

There are223 helices in PDB entry 9I1J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	504	513	Right-handed alpha
Helix 2	AA2	A	517	535	Right-handed alpha
Helix 3	AA3	A	558	575	Right-handed alpha
Helix 4	AA4	A	578	582	Right-handed 310
Helix 5	AA5	A	590	604	Right-handed alpha
Helix 6	AA6	A	611	619	Right-handed alpha
Helix 7	AA7	A	628	636	Right-handed alpha
Helix 8	AA8	A	637	640	Right-handed 310
Helix 9	AA9	A	642	656	Right-handed alpha
Helix 10	AB1	A	663	666	Right-handed 310
Helix 11	AB2	A	667	674	Right-handed alpha
Helix 12	AB3	A	688	693	Right-handed alpha
Helix 13	AB4	A	700	705	Right-handed alpha
Helix 14	AB5	A	711	720	Right-handed alpha
Helix 15	AB6	A	721	724	Right-handed 310
Helix 16	AB7	A	728	738	Right-handed alpha
Helix 17	AB8	A	739	749	Right-handed alpha
Helix 18	AB9	A	750	757	Right-handed alpha
Helix 19	AC1	A	759	775	Right-handed alpha
Helix 20	AC2	A	781	801	Right-handed alpha
Helix 21	AC3	A	802	807	Right-handed 310
Helix 22	AC4	A	810	827	Right-handed alpha
Helix 23	AC5	A	835	851	Right-handed alpha
Helix 24	AC6	A	864	889	Right-handed alpha
Helix 25	AC7	A	908	915	Right-handed alpha
Helix 26	AC8	A	929	939	Right-handed alpha
Helix 27	AC9	A	942	951	Right-handed alpha
Helix 28	AD1	A	962	982	Right-handed alpha
Helix 29	AD2	A	994	1010	Right-handed alpha
Helix 30	AD3	A	1021	1031	Right-handed alpha
Helix 31	AD4	A	1031	1044	Right-handed alpha
Helix 32	AD5	A	1054	1075	Right-handed alpha
Helix 33	AD6	A	1079	1089	Right-handed alpha
Helix 34	AD7	A	1089	1101	Right-handed alpha
Helix 35	AD8	A	1113	1144	Right-handed alpha
Helix 36	AD9	A	1154	1159	Right-handed alpha
Helix 37	AE1	A	1166	1171	Right-handed 310
Helix 38	AE2	A	1190	1203	Right-handed alpha
Helix 39	AE3	A	1206	1218	Right-handed alpha
Helix 40	AE4	A	1219	1221	Right-handed 310
Helix 41	AE5	A	1233	1241	Right-handed alpha
Helix 42	AE6	A	1241	1259	Right-handed alpha
Helix 43	AE7	A	1262	1270	Right-handed alpha
Helix 44	AE8	A	1271	1273	Right-handed 310
Helix 45	AE9	A	1276	1291	Right-handed alpha
Helix 46	AF1	A	1298	1330	Right-handed alpha
Helix 47	AF2	A	1338	1347	Right-handed alpha
Helix 48	AF3	A	1360	1362	Right-handed 310
Helix 49	AF4	A	1363	1368	Right-handed alpha
Helix 50	AF5	A	1369	1371	Right-handed 310
Helix 51	AF6	A	1377	1387	Right-handed alpha
Helix 52	AF7	A	1387	1398	Right-handed alpha
Helix 53	AF8	A	1403	1415	Right-handed alpha
Helix 54	AF9	A	1418	1441	Right-handed alpha
Helix 55	AG1	A	1447	1463	Right-handed alpha
Helix 56	AG2	A	1467	1477	Right-handed alpha
Helix 57	AG3	A	1478	1484	Right-handed alpha
Helix 58	AG4	A	1497	1507	Right-handed alpha
Helix 59	AG5	A	1545	1557	Right-handed alpha
Helix 60	AG6	A	1563	1594	Right-handed alpha
Helix 61	AG7	A	1630	1661	Right-handed alpha
Helix 62	AG8	A	1667	1679	Right-handed alpha
Helix 63	AG9	A	1684	1692	Right-handed alpha
Helix 64	AH1	A	1699	1708	Right-handed alpha
Helix 65	AH2	A	1712	1731	Right-handed alpha
Helix 66	AH3	A	1735	1750	Right-handed alpha
Helix 67	AH4	A	1760	1775	Right-handed alpha
Helix 68	AH5	A	1801	1811	Right-handed alpha
Helix 69	AH6	A	1832	1844	Right-handed alpha
Helix 70	AH7	A	1858	1862	Right-handed 310
Helix 71	AH8	A	1863	1881	Right-handed alpha
Helix 72	AH9	A	1899	1904	Right-handed alpha
Helix 73	AI1	A	1917	1930	Right-handed alpha
Helix 74	AI2	A	1938	1942	Right-handed 310
Helix 75	AI3	A	1959	1974	Right-handed alpha
Helix 76	AI4	A	1993	2002	Right-handed alpha
Helix 77	AI5	A	2003	2005	Right-handed 310
Helix 78	AI6	A	2027	2037	Right-handed alpha
Helix 79	AI7	A	2081	2085	Right-handed alpha
Helix 80	AI8	A	2095	2100	Right-handed alpha
Helix 81	AI9	A	2116	2122	Right-handed alpha
Helix 82	AJ1	A	2122	2137	Right-handed alpha
Helix 83	AJ2	A	2154	2165	Right-handed alpha
Helix 84	AJ3	A	2172	2193	Right-handed alpha
Helix 85	AJ4	A	2194	2203	Right-handed alpha
Helix 86	AJ5	A	2207	2224	Right-handed alpha
Helix 87	AJ6	A	2308	2319	Right-handed alpha
Helix 88	AJ7	A	2325	2329	Right-handed 310
Helix 89	AJ8	A	2330	2342	Right-handed alpha
Helix 90	AJ9	A	2357	2374	Right-handed alpha
Helix 91	AK1	A	2387	2400	Right-handed alpha
Helix 92	AK2	A	2417	2440	Right-handed alpha
Helix 93	AK3	A	2455	2465	Right-handed alpha
Helix 94	AK4	A	2492	2501	Right-handed alpha
Helix 95	AK5	A	2536	2540	Right-handed 310
Helix 96	AK6	A	2550	2563	Right-handed alpha
Helix 97	AK7	A	2564	2568	Right-handed 310
Helix 98	AK8	A	2571	2589	Right-handed alpha
Helix 99	AK9	A	2600	2615	Right-handed alpha
Helix 100	AL1	A	2618	2631	Right-handed alpha
Helix 101	AL2	A	2632	2636	Right-handed 310
Helix 102	AL3	A	2640	2654	Right-handed alpha
Helix 103	AL4	A	2660	2669	Right-handed alpha
Helix 104	AL5	A	2670	2672	Right-handed 310
Helix 105	AL6	A	2673	2677	Right-handed 310
Helix 106	AL7	A	2678	2697	Right-handed alpha
Helix 107	AL8	A	2706	2722	Right-handed alpha
Helix 108	AL9	A	2736	2747	Right-handed alpha
Helix 109	AM1	A	2754	2759	Right-handed alpha
Helix 110	AM2	A	2775	2791	Right-handed alpha
Helix 111	AM3	A	2852	2856	Right-handed 310
Helix 112	AM4	A	2867	2879	Right-handed alpha
Helix 113	AM5	A	2883	2888	Right-handed alpha
Helix 114	AM6	A	2892	2907	Right-handed alpha
Helix 115	AM7	A	2913	2932	Right-handed alpha
Helix 116	AM8	A	2936	2948	Right-handed alpha
Helix 117	AM9	A	2955	2964	Right-handed alpha
Helix 118	AN1	A	2965	2968	Right-handed 310
Helix 119	AN2	A	2974	2984	Right-handed alpha
Helix 120	AN3	A	3010	3018	Right-handed alpha
Helix 121	AN4	A	3037	3056	Right-handed alpha
Helix 122	AN5	A	3071	3077	Right-handed alpha
Helix 123	AN6	A	3113	3120	Right-handed alpha
Helix 124	AN7	A	3122	3128	Right-handed alpha
Helix 125	AN8	A	3140	3159	Right-handed alpha
Helix 126	AN9	A	3172	3177	Right-handed alpha
Helix 127	AO1	A	3183	3197	Right-handed alpha
Helix 128	AO2	A	3204	3219	Right-handed alpha
Helix 129	AO3	A	3222	3229	Right-handed alpha
Helix 130	AO4	A	3230	3232	Right-handed 310
Helix 131	AO5	A	3236	3248	Right-handed alpha
Helix 132	AO6	A	3254	3264	Right-handed alpha
Helix 133	AO7	A	3286	3296	Right-handed alpha
Helix 134	AO8	A	3309	3311	Right-handed 310
Helix 135	AO9	A	3313	3327	Right-handed alpha
Helix 136	AP1	A	3349	3365	Right-handed alpha
Helix 137	AP2	A	3413	3420	Right-handed alpha
Helix 138	AP3	A	3422	3427	Right-handed 310
Helix 139	AP4	A	3476	3491	Right-handed alpha
Helix 140	AP5	A	3501	3511	Right-handed alpha
Helix 141	AP6	A	3517	3540	Right-handed alpha
Helix 142	AP7	A	3548	3556	Right-handed alpha
Helix 143	AP8	A	3556	3563	Right-handed alpha
Helix 144	AP9	A	3565	3590	Right-handed alpha
Helix 145	AQ1	A	3594	3600	Right-handed alpha
Helix 146	AQ2	A	3604	3616	Right-handed alpha
Helix 147	AQ3	A	3657	3676	Right-handed alpha
Helix 148	AQ4	A	3680	3692	Right-handed alpha
Helix 149	AQ5	A	3692	3699	Right-handed alpha
Helix 150	AQ6	A	3702	3722	Right-handed alpha
Helix 151	AQ7	A	3727	3746	Right-handed alpha
Helix 152	AQ8	A	3753	3757	Right-handed 310
Helix 153	AQ9	A	3760	3785	Right-handed alpha
Helix 154	AR1	A	3786	3800	Right-handed alpha
Helix 155	AR2	A	3807	3824	Right-handed alpha
Helix 156	AR3	A	3828	3838	Right-handed alpha
Helix 157	AR4	A	3839	3847	Right-handed alpha
Helix 158	AR5	A	3856	3890	Right-handed alpha
Helix 159	AR6	A	3894	3909	Right-handed alpha
Helix 160	AR7	A	3917	3940	Right-handed alpha
Helix 161	AR8	A	3967	3975	Right-handed alpha
Helix 162	AR9	A	4000	4027	Right-handed alpha
Helix 163	AS1	A	4035	4045	Right-handed alpha
Helix 164	AS2	A	4082	4089	Right-handed alpha
Helix 165	AS3	A	4092	4095	Right-handed 310
Helix 166	AS4	A	4096	4111	Right-handed alpha
Helix 167	AS5	A	4116	4139	Right-handed alpha
Helix 168	AS6	A	4142	4156	Right-handed alpha
Helix 169	AS7	A	4160	4165	Right-handed 310
Helix 170	AS8	A	4171	4197	Right-handed alpha
Helix 171	AS9	A	4204	4219	Right-handed alpha
Helix 172	AT1	A	4222	4236	Right-handed alpha
Helix 173	AT2	A	4237	4245	Right-handed alpha
Helix 174	AT3	A	4251	4255	Right-handed 310
Helix 175	AT4	A	4271	4276	Right-handed 310
Helix 176	AT5	A	4279	4293	Right-handed alpha
Helix 177	AT6	A	4296	4305	Right-handed alpha
Helix 178	AT7	A	4309	4331	Right-handed alpha
Helix 179	AT8	A	4332	4335	Right-handed 310
Helix 180	AT9	A	4342	4353	Right-handed alpha
Helix 181	AU1	A	4358	4370	Right-handed alpha
Helix 182	AU2	A	4385	4403	Right-handed alpha
Helix 183	AU3	A	4405	4407	Right-handed 310
Helix 184	AU4	A	4408	4417	Right-handed alpha
Helix 185	AU5	A	4418	4422	Right-handed 310
Helix 186	AU6	A	4522	4544	Right-handed alpha
Helix 187	AU7	A	4544	4552	Right-handed alpha
Helix 188	AU8	A	4559	4578	Right-handed alpha
Helix 189	AU9	A	4581	4596	Right-handed alpha
Helix 190	AV1	A	4613	4633	Right-handed alpha
Helix 191	AV2	A	4638	4648	Right-handed alpha
Helix 192	AV3	A	4655	4660	Right-handed alpha
Helix 193	AV4	A	4691	4702	Right-handed alpha
Helix 194	AV5	A	4708	4717	Right-handed alpha
Helix 195	AV6	A	4717	4722	Right-handed alpha
Helix 196	AV7	A	4723	4725	Right-handed 310
Helix 197	AV8	A	4726	4741	Right-handed alpha
Helix 198	AV9	A	4751	4758	Right-handed alpha
Helix 199	AW1	A	4761	4783	Right-handed alpha
Helix 200	AW2	A	4785	4790	Right-handed alpha
Helix 201	AW3	A	4820	4845	Right-handed alpha
Helix 202	AW4	A	4854	4858	Right-handed 310
Helix 203	AW5	A	4871	4878	Right-handed alpha
Helix 204	AW6	A	4895	4905	Right-handed alpha
Helix 205	AW7	A	4916	4919	Right-handed 310
Helix 206	AW8	A	4930	4941	Right-handed alpha
Helix 207	AW9	A	4947	4958	Right-handed alpha
Helix 208	AX1	A	4960	4980	Right-handed alpha
Helix 209	AX2	A	4988	4996	Right-handed alpha
Helix 210	AX3	A	5003	5011	Right-handed alpha
Helix 211	AX4	A	5012	5013	Right-handed 310
Helix 212	AX5	A	5014	5016	Right-handed 310
Helix 213	AX6	A	5017	5036	Right-handed alpha
Helix 214	AX7	A	5045	5049	Right-handed 310
Helix 215	AX8	A	5053	5066	Right-handed alpha
Helix 216	AX9	A	5068	5084	Right-handed alpha
Helix 217	AY1	A	5098	5108	Right-handed alpha
Helix 218	AY2	A	5115	5120	Right-handed alpha
Helix 219	AY3	A	5131	5147	Right-handed alpha
Helix 220	AY4	B	1	18	Right-handed alpha
Helix 221	AY5	B	100	114	Right-handed alpha
Helix 222	AY6	B	122	132	Right-handed alpha
Helix 223	AY7	B	132	148	Right-handed alpha

There are 18 sheets in PDB entry 9I1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1541	1544	first strand
Strand 2	A	1526	1530	anti-parallel
Strand 3	A	1508	1511	anti-parallel
Strand 4	A	1602	1606	anti-parallel
Strand 5	A	1612	1616	anti-parallel
Strand 6	A	1625	1627	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1793	1796	first strand
Strand 2	A	1887	1892	parallel
Strand 3	A	1853	1857	parallel
Strand 4	A	1824	1826	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2058	2062	first strand
Strand 2	A	1949	1953	parallel
Strand 3	A	2090	2092	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1984	1987	first strand
Strand 2	A	2017	2020	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2040	2042	first strand
Strand 2	A	2048	2050	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2266	2269	first strand
Strand 2	A	2276	2279	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2282	2285	first strand
Strand 2	A	2291	2294	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2377	2379	first strand
Strand 2	A	2480	2484	parallel
Strand 3	A	2444	2448	parallel
Strand 4	A	2407	2411	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2467	2468	first strand
Strand 2	A	2471	2472	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2762	2767	first strand
Strand 2	A	2798	2803	parallel
Strand 3	A	2841	2843	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3002	3006	first strand
Strand 2	A	3107	3112	parallel
Strand 3	A	3059	3061	parallel
Strand 4	A	3026	3028	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3086	3092	first strand
Strand 2	A	3095	3101	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3304	3307	first strand
Strand 2	A	3334	3339	parallel
Strand 3	A	3372	3378	parallel
Strand 4	A	3273	3279	parallel
Strand 5	A	3398	3400	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3492	3493	first strand
Strand 2	A	3639	3640	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3958	3959	first strand
Strand 2	A	3965	3966	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4852	4853	first strand
Strand 2	A	4913	4914	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4880	4884	first strand
Strand 2	A	4890	4894	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	28	first strand
Strand 2	B	31	39	anti-parallel
Strand 3	B	51	56	anti-parallel
Strand 4	B	67	70	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9I1J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9I1J