Analysis of interatomic Contacts of Structural Units in PDB entry:
9I1P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9I1P entry

There are 3 chains in PDB entry 9I1P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 62	LYS 592
B	MET 62	LYS 592
C	MET 62	THR 254

There are104 helices in PDB entry 9I1P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	69	Right-handed 310
Helix 2	AA2	A	75	86	Right-handed alpha
Helix 3	AA3	A	95	105	Right-handed alpha
Helix 4	AA4	A	120	129	Right-handed alpha
Helix 5	AA5	A	140	152	Right-handed alpha
Helix 6	AA6	A	166	177	Right-handed alpha
Helix 7	AA7	A	191	196	Right-handed alpha
Helix 8	AA8	A	197	210	Right-handed alpha
Helix 9	AA9	A	220	225	Right-handed 310
Helix 10	AB1	A	232	238	Right-handed 310
Helix 11	AB2	A	239	245	Right-handed alpha
Helix 12	AB3	A	258	269	Right-handed alpha
Helix 13	AB4	A	296	312	Right-handed alpha
Helix 14	AB5	A	323	336	Right-handed alpha
Helix 15	AB6	A	349	353	Right-handed 310
Helix 16	AB7	A	354	362	Right-handed alpha
Helix 17	AB8	A	394	403	Right-handed alpha
Helix 18	AB9	A	419	430	Right-handed alpha
Helix 19	AC1	A	435	449	Right-handed alpha
Helix 20	AC2	A	453	460	Right-handed alpha
Helix 21	AC3	A	461	466	Right-handed 310
Helix 22	AC4	A	475	480	Right-handed alpha
Helix 23	AC5	A	489	506	Right-handed alpha
Helix 24	AC6	A	511	521	Right-handed alpha
Helix 25	AC7	A	524	528	Right-handed 310
Helix 26	AC8	A	538	552	Right-handed alpha
Helix 27	AC9	A	574	581	Right-handed 310
Helix 28	AD1	B	64	69	Right-handed 310
Helix 29	AD2	B	75	86	Right-handed alpha
Helix 30	AD3	B	95	105	Right-handed alpha
Helix 31	AD4	B	120	129	Right-handed alpha
Helix 32	AD5	B	140	154	Right-handed alpha
Helix 33	AD6	B	166	177	Right-handed alpha
Helix 34	AD7	B	191	196	Right-handed alpha
Helix 35	AD8	B	197	210	Right-handed alpha
Helix 36	AD9	B	220	225	Right-handed 310
Helix 37	AE1	B	232	238	Right-handed 310
Helix 38	AE2	B	239	245	Right-handed alpha
Helix 39	AE3	B	258	269	Right-handed alpha
Helix 40	AE4	B	296	312	Right-handed alpha
Helix 41	AE5	B	323	337	Right-handed alpha
Helix 42	AE6	B	349	362	Right-handed alpha
Helix 43	AE7	B	394	403	Right-handed alpha
Helix 44	AE8	B	419	431	Right-handed alpha
Helix 45	AE9	B	436	449	Right-handed alpha
Helix 46	AF1	B	453	460	Right-handed alpha
Helix 47	AF2	B	461	466	Right-handed 310
Helix 48	AF3	B	475	480	Right-handed alpha
Helix 49	AF4	B	489	506	Right-handed alpha
Helix 50	AF5	B	511	521	Right-handed alpha
Helix 51	AF6	B	524	528	Right-handed 310
Helix 52	AF7	B	538	552	Right-handed alpha
Helix 53	AF8	B	574	581	Right-handed 310
Helix 54	AF9	C	64	69	Right-handed 310
Helix 55	AG1	C	75	86	Right-handed alpha
Helix 56	AG2	C	95	105	Right-handed alpha
Helix 57	AG3	C	120	129	Right-handed alpha
Helix 58	AG4	C	140	154	Right-handed alpha
Helix 59	AG5	C	166	177	Right-handed alpha
Helix 60	AG6	C	191	196	Right-handed alpha
Helix 61	AG7	C	197	210	Right-handed alpha
Helix 62	AG8	C	220	225	Right-handed 310
Helix 63	AG9	C	232	237	Right-handed alpha
Helix 64	AH1	C	239	245	Right-handed alpha
Helix 65	AH2	C	258	269	Right-handed alpha
Helix 66	AH3	C	296	312	Right-handed alpha
Helix 67	AH4	C	323	336	Right-handed alpha
Helix 68	AH5	C	349	362	Right-handed alpha
Helix 69	AH6	C	394	403	Right-handed alpha
Helix 70	AH7	C	419	430	Right-handed alpha
Helix 71	AH8	C	435	449	Right-handed alpha
Helix 72	AH9	C	453	460	Right-handed alpha
Helix 73	AI1	C	461	466	Right-handed 310
Helix 74	AI2	C	475	480	Right-handed alpha
Helix 75	AI3	C	489	506	Right-handed alpha
Helix 76	AI4	C	511	521	Right-handed alpha
Helix 77	AI5	C	524	528	Right-handed 310
Helix 78	AI6	C	538	552	Right-handed alpha
Helix 79	AI7	C	574	581	Right-handed 310
Helix 80	AI8	D	64	69	Right-handed 310
Helix 81	AI9	D	75	86	Right-handed alpha
Helix 82	AJ1	D	95	105	Right-handed alpha
Helix 83	AJ2	D	120	129	Right-handed alpha
Helix 84	AJ3	D	140	154	Right-handed alpha
Helix 85	AJ4	D	166	177	Right-handed alpha
Helix 86	AJ5	D	191	196	Right-handed alpha
Helix 87	AJ6	D	197	210	Right-handed alpha
Helix 88	AJ7	D	220	225	Right-handed 310
Helix 89	AJ8	D	232	238	Right-handed 310
Helix 90	AJ9	D	239	245	Right-handed alpha
Helix 91	AK1	D	258	269	Right-handed alpha
Helix 92	AK2	D	296	312	Right-handed alpha
Helix 93	AK3	D	323	337	Right-handed alpha
Helix 94	AK4	D	349	362	Right-handed alpha
Helix 95	AK5	D	394	403	Right-handed alpha
Helix 96	AK6	D	419	430	Right-handed alpha
Helix 97	AK7	D	435	449	Right-handed alpha
Helix 98	AK8	D	453	460	Right-handed alpha
Helix 99	AK9	D	461	466	Right-handed 310
Helix 100	AL1	D	475	480	Right-handed alpha
Helix 101	AL2	D	489	506	Right-handed alpha
Helix 102	AL3	D	511	521	Right-handed alpha
Helix 103	AL4	D	538	552	Right-handed alpha
Helix 104	AL5	D	574	581	Right-handed 310

There are 17 sheets in PDB entry 9I1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	161	first strand
Strand 2	A	184	189	parallel
Strand 3	A	133	137	parallel
Strand 4	A	213	218	parallel
Strand 5	A	249	254	parallel
Strand 6	A	109	112	parallel
Strand 7	A	275	278	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	292	first strand
Strand 2	A	412	418	parallel
Strand 3	A	385	388	parallel
Strand 4	A	317	320	parallel
Strand 5	A	367	370	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	488	first strand
Strand 2	A	587	591	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	561	first strand
Strand 2	A	566	572	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	186	189	parallel
Strand 3	B	133	137	parallel
Strand 4	B	213	218	parallel
Strand 5	B	249	254	parallel
Strand 6	B	109	112	parallel
Strand 7	B	275	278	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	292	first strand
Strand 2	B	412	418	parallel
Strand 3	B	385	388	parallel
Strand 4	B	317	321	parallel
Strand 5	B	367	371	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	488	first strand
Strand 2	B	587	588	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	555	561	first strand
Strand 2	B	566	572	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	184	189	parallel
Strand 3	C	133	137	parallel
Strand 4	C	213	218	parallel
Strand 5	C	249	254	parallel
Strand 6	C	109	112	parallel
Strand 7	C	275	278	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	292	first strand
Strand 2	C	412	418	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	344	first strand
Strand 2	C	368	371	parallel
Strand 3	C	317	321	parallel
Strand 4	C	385	388	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	488	first strand
Strand 2	C	587	589	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	555	561	first strand
Strand 2	C	566	572	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	186	189	parallel
Strand 3	D	133	137	parallel
Strand 4	D	213	218	parallel
Strand 5	D	249	254	parallel
Strand 6	D	109	112	parallel
Strand 7	D	275	278	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	292	first strand
Strand 2	D	412	418	parallel
Strand 3	D	385	388	parallel
Strand 4	D	317	320	parallel
Strand 5	D	369	370	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	484	488	first strand
Strand 2	D	587	591	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	555	561	first strand
Strand 2	D	566	572	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9I1P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9I1P