Analysis of interatomic Contacts of Structural Units in PDB entry:
9I27


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9I27 entry

There are 4 chains in PDB entry 9I27 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3ILE 190
A
 ASN 192THR 460
B
 GLN 3ILE 190
B
 ASN 192THR 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 9I27. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 21Right-handed alpha
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
61 67Right-handed alpha
Helix 4
AA4
A
88 90Right-handed 310
Helix 5
AA5
A
100 109Right-handed alpha
Helix 6
AA6
A
110 114Right-handed 310
Helix 7
AA7
A
129 134Right-handed alpha
Helix 8
AA8
A
142 151Right-handed alpha
Helix 9
AA9
A
172 185Right-handed alpha
Helix 10
AB1
A
203 223Right-handed alpha
Helix 11
AB2
A
236 251Right-handed alpha
Helix 12
AB3
A
252 256Right-handed 310
Helix 13
AB4
A
264 268Right-handed alpha
Helix 14
AB5
A
268 279Right-handed alpha
Helix 15
AB6
A
291 296Right-handed alpha
Helix 16
AB7
A
304 316Right-handed alpha
Helix 17
AB8
A
333 335Right-handed 310
Helix 18
AB9
A
336 345Right-handed alpha
Helix 19
AC1
A
375 384Right-handed alpha
Helix 20
AC2
A
393 398Right-handed alpha
Helix 21
AC3
A
402 419Right-handed alpha
Helix 22
AC4
A
422 428Right-handed alpha
Helix 23
AC5
A
430 440Right-handed alpha
Helix 24
AC6
A
440 448Right-handed alpha
Helix 25
AC7
A
450 456Right-handed alpha
Helix 26
AC8
B
4 8Right-handed alpha
Helix 27
AC9
B
13 21Right-handed alpha
Helix 28
AD1
B
37 49Right-handed alpha
Helix 29
AD2
B
61 67Right-handed alpha
Helix 30
AD3
B
88 90Right-handed 310
Helix 31
AD4
B
100 109Right-handed alpha
Helix 32
AD5
B
110 114Right-handed 310
Helix 33
AD6
B
129 134Right-handed alpha
Helix 34
AD7
B
142 150Right-handed alpha
Helix 35
AD8
B
172 185Right-handed alpha
Helix 36
AD9
B
203 223Right-handed alpha
Helix 37
AE1
B
236 251Right-handed alpha
Helix 38
AE2
B
252 256Right-handed 310
Helix 39
AE3
B
264 268Right-handed alpha
Helix 40
AE4
B
268 279Right-handed alpha
Helix 41
AE5
B
291 296Right-handed alpha
Helix 42
AE6
B
304 316Right-handed alpha
Helix 43
AE7
B
333 335Right-handed 310
Helix 44
AE8
B
336 345Right-handed alpha
Helix 45
AE9
B
375 384Right-handed alpha
Helix 46
AF1
B
392 398Right-handed alpha
Helix 47
AF2
B
402 419Right-handed alpha
Helix 48
AF3
B
422 430Right-handed alpha
Helix 49
AF4
B
430 440Right-handed alpha
Helix 50
AF5
B
440 448Right-handed alpha
Helix 51
AF6
B
450 456Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9I27. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 75first strand
Strand 2
A
80 86anti-parallel
Strand 3
A
23 32anti-parallel
Strand 4
A
118 127anti-parallel
Strand 5
A
302 303parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 164first strand
Strand 2
A
189 191parallel
Strand 3
A
227 231parallel
Strand 4
A
258 263parallel
Strand 5
A
284 287parallel
Strand 6
A
319 321parallel
Strand 7
A
364 368parallel
Strand 8
A
389 391parallel
Strand 9
A
160 164parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
354 356anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 75first strand
Strand 2
B
80 86anti-parallel
Strand 3
B
23 32anti-parallel
Strand 4
B
118 127anti-parallel
Strand 5
B
302 303parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 164first strand
Strand 2
B
189 191parallel
Strand 3
B
227 231parallel
Strand 4
B
258 263parallel
Strand 5
B
284 287parallel
Strand 6
B
319 321parallel
Strand 7
B
364 368parallel
Strand 8
B
389 391parallel
Strand 9
B
160 164parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 349first strand
Strand 2
B
354 356anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il