Analysis of interatomic Contacts of Structural Units in PDB entry:
9I2J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9I2J entry

There are 2 chains in PDB entry 9I2J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	LYS 1164
B	SER 3	LYS 1164

There are 69 helices in PDB entry 9I2J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	298	304	Right-handed alpha
Helix 2	AA2	A	352	354	Right-handed 310
Helix 3	AA3	A	358	372	Right-handed alpha
Helix 4	AA4	A	386	409	Right-handed alpha
Helix 5	AA5	A	411	419	Right-handed alpha
Helix 6	AA6	A	428	441	Right-handed 310
Helix 7	AA7	A	459	463	Right-handed 310
Helix 8	AA8	A	486	502	Right-handed alpha
Helix 9	AA9	A	502	509	Right-handed alpha
Helix 10	AB1	A	522	526	Right-handed 310
Helix 11	AB2	A	527	543	Right-handed alpha
Helix 12	AB3	A	547	552	Right-handed alpha
Helix 13	AB4	A	561	564	Right-handed 310
Helix 14	AB5	A	565	572	Right-handed alpha
Helix 15	AB6	A	579	587	Right-handed alpha
Helix 16	AB7	A	605	610	Right-handed 310
Helix 17	AB8	A	641	653	Right-handed alpha
Helix 18	AB9	A	664	680	Right-handed alpha
Helix 19	AC1	A	690	701	Right-handed alpha
Helix 20	AC2	A	710	714	Right-handed alpha
Helix 21	AC3	A	733	748	Right-handed alpha
Helix 22	AC4	A	793	799	Right-handed 310
Helix 23	AC5	A	824	828	Right-handed 310
Helix 24	AC6	A	922	927	Right-handed alpha
Helix 25	AC7	A	943	946	Right-handed 310
Helix 26	AC8	A	947	954	Right-handed alpha
Helix 27	AC9	A	955	963	Right-handed alpha
Helix 28	AD1	A	980	984	Right-handed 310
Helix 29	AD2	A	985	990	Right-handed alpha
Helix 30	AD3	A	1012	1026	Right-handed alpha
Helix 31	AD4	A	1081	1088	Right-handed alpha
Helix 32	AD5	A	1091	1099	Right-handed alpha
Helix 33	AD6	A	1121	1123	Right-handed 310
Helix 34	AD7	A	1160	1164	Right-handed 310
Helix 35	AD8	B	298	305	Right-handed alpha
Helix 36	AD9	B	310	312	Right-handed 310
Helix 37	AE1	B	352	354	Right-handed 310
Helix 38	AE2	B	358	372	Right-handed alpha
Helix 39	AE3	B	386	409	Right-handed alpha
Helix 40	AE4	B	411	419	Right-handed alpha
Helix 41	AE5	B	428	441	Right-handed 310
Helix 42	AE6	B	459	463	Right-handed 310
Helix 43	AE7	B	486	502	Right-handed alpha
Helix 44	AE8	B	502	509	Right-handed alpha
Helix 45	AE9	B	522	526	Right-handed 310
Helix 46	AF1	B	527	543	Right-handed alpha
Helix 47	AF2	B	547	552	Right-handed alpha
Helix 48	AF3	B	561	564	Right-handed 310
Helix 49	AF4	B	565	572	Right-handed alpha
Helix 50	AF5	B	579	587	Right-handed alpha
Helix 51	AF6	B	605	610	Right-handed 310
Helix 52	AF7	B	641	653	Right-handed alpha
Helix 53	AF8	B	664	680	Right-handed alpha
Helix 54	AF9	B	690	701	Right-handed alpha
Helix 55	AG1	B	710	714	Right-handed alpha
Helix 56	AG2	B	733	748	Right-handed alpha
Helix 57	AG3	B	793	798	Right-handed alpha
Helix 58	AG4	B	824	828	Right-handed 310
Helix 59	AG5	B	922	927	Right-handed alpha
Helix 60	AG6	B	943	946	Right-handed 310
Helix 61	AG7	B	947	954	Right-handed alpha
Helix 62	AG8	B	955	963	Right-handed alpha
Helix 63	AG9	B	980	984	Right-handed 310
Helix 64	AH1	B	985	990	Right-handed alpha
Helix 65	AH2	B	1012	1026	Right-handed alpha
Helix 66	AH3	B	1081	1088	Right-handed alpha
Helix 67	AH4	B	1091	1099	Right-handed alpha
Helix 68	AH5	B	1121	1123	Right-handed 310
Helix 69	AH6	B	1160	1164	Right-handed 310

There are 41 sheets in PDB entry 9I2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	11	15	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	28	first strand
Strand 2	A	31	35	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	54	57	anti-parallel
Strand 3	A	64	66	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	78	first strand
Strand 2	A	81	86	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	99	first strand
Strand 2	A	102	106	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	121	first strand
Strand 2	A	124	128	anti-parallel
Strand 3	A	135	136	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	149	first strand
Strand 2	A	161	165	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	178	first strand
Strand 2	A	181	185	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	203	207	anti-parallel
Strand 3	A	214	220	anti-parallel
Strand 4	A	245	249	parallel
Strand 5	A	252	256	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	229	first strand
Strand 2	A	232	236	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	274	278	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	349	350	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	340	342	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1038	1039	first strand
Strand 2	A	480	482	anti-parallel
Strand 3	A	1125	1129	anti-parallel
Strand 4	A	450	454	anti-parallel
Strand 5	A	1045	1056	anti-parallel
Strand 6	A	1070	1078	anti-parallel
Strand 7	A	1042	1043	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1038	1039	first strand
Strand 2	A	480	482	anti-parallel
Strand 3	A	1125	1129	anti-parallel
Strand 4	A	450	454	anti-parallel
Strand 5	A	1045	1056	anti-parallel
Strand 6	A	1062	1064	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	558	first strand
Strand 2	A	517	520	parallel
Strand 3	A	1029	1034	parallel
Strand 4	A	966	968	parallel
Strand 5	A	930	932	parallel
Strand 6	A	705	709	parallel
Strand 7	A	630	632	parallel
Strand 8	A	576	577	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	620	first strand
Strand 2	A	752	759	anti-parallel
Strand 3	A	773	780	anti-parallel
Strand 4	A	801	806	anti-parallel
Strand 5	A	887	895	anti-parallel
Strand 6	A	831	838	anti-parallel
Strand 7	A	854	856	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	843	845	first strand
Strand 2	A	831	838	anti-parallel
Strand 3	A	887	895	anti-parallel
Strand 4	A	881	882	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	819	822	first strand
Strand 2	A	862	865	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	974	975	first strand
Strand 2	A	996	998	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	11	15	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	28	first strand
Strand 2	B	31	35	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	54	57	anti-parallel
Strand 3	B	64	65	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	78	first strand
Strand 2	B	81	86	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	99	first strand
Strand 2	B	102	106	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	121	first strand
Strand 2	B	124	128	anti-parallel
Strand 3	B	135	136	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	141	first strand
Strand 2	B	174	178	parallel
Strand 3	B	181	185	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	149	first strand
Strand 2	B	161	165	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	200	first strand
Strand 2	B	203	207	anti-parallel
Strand 3	B	214	220	anti-parallel
Strand 4	B	245	249	parallel
Strand 5	B	252	256	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	228	first strand
Strand 2	B	233	236	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	271	first strand
Strand 2	B	274	278	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	315	first strand
Strand 2	B	327	328	anti-parallel
Strand 3	B	349	350	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	335	first strand
Strand 2	B	339	342	anti-parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1038	1039	first strand
Strand 2	B	480	482	anti-parallel
Strand 3	B	1125	1129	anti-parallel
Strand 4	B	450	454	anti-parallel
Strand 5	B	1045	1056	anti-parallel
Strand 6	B	1070	1078	anti-parallel
Strand 7	B	1042	1043	parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1038	1039	first strand
Strand 2	B	480	482	anti-parallel
Strand 3	B	1125	1129	anti-parallel
Strand 4	B	450	454	anti-parallel
Strand 5	B	1045	1056	anti-parallel
Strand 6	B	1062	1064	anti-parallel

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There are 8 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	558	first strand
Strand 2	B	517	520	parallel
Strand 3	B	1029	1034	parallel
Strand 4	B	966	968	parallel
Strand 5	B	930	932	parallel
Strand 6	B	705	709	parallel
Strand 7	B	630	632	parallel
Strand 8	B	576	577	parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	619	620	first strand
Strand 2	B	752	759	anti-parallel
Strand 3	B	773	780	anti-parallel
Strand 4	B	801	806	anti-parallel
Strand 5	B	887	895	anti-parallel
Strand 6	B	831	838	anti-parallel
Strand 7	B	854	856	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	843	845	first strand
Strand 2	B	831	838	anti-parallel
Strand 3	B	887	895	anti-parallel
Strand 4	B	881	882	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	819	822	first strand
Strand 2	B	862	865	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	974	975	first strand
Strand 2	B	996	998	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1140	1141	first strand
Strand 2	B	1146	1147	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9I2J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9I2J