Analysis of interatomic Contacts of Structural Units in PDB entry:
9I3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9I3F entry

There are 8 chains in PDB entry 9I3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 ASP 321PRO 347
A
 GLN 42LEU 171
B
 GLN 42LEU 171
C
 GLN 42LEU 171
D
 GLN 42LEU 171
F
 GLY 322LEU 353
G
 THR 316VAL 332
H
 GLY 322PRO 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9I3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 69Right-handed alpha
Helix 2
AA2
A
81 94Right-handed alpha
Helix 3
AA3
A
94 101Right-handed alpha
Helix 4
AA4
A
102 104Right-handed 310
Helix 5
AA5
A
115 119Right-handed 310
Helix 6
AA6
A
153 155Right-handed 310
Helix 7
AA7
A
156 169Right-handed alpha
Helix 8
AA8
B
57 69Right-handed alpha
Helix 9
AA9
B
81 94Right-handed alpha
Helix 10
AB1
B
94 101Right-handed alpha
Helix 11
AB2
B
102 104Right-handed 310
Helix 12
AB3
B
115 119Right-handed 310
Helix 13
AB4
B
153 155Right-handed 310
Helix 14
AB5
B
156 169Right-handed alpha
Helix 15
AB6
C
57 69Right-handed alpha
Helix 16
AB7
C
81 94Right-handed alpha
Helix 17
AB8
C
94 101Right-handed alpha
Helix 18
AB9
C
102 104Right-handed 310
Helix 19
AC1
C
115 119Right-handed 310
Helix 20
AC2
C
153 155Right-handed 310
Helix 21
AC3
C
156 169Right-handed alpha
Helix 22
AC4
D
57 69Right-handed alpha
Helix 23
AC5
D
81 94Right-handed alpha
Helix 24
AC6
D
94 101Right-handed alpha
Helix 25
AC7
D
102 104Right-handed 310
Helix 26
AC8
D
115 119Right-handed 310
Helix 27
AC9
D
153 155Right-handed 310
Helix 28
AD1
D
156 169Right-handed alpha
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There are 8 sheets in PDB entry 9I3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
329 330first strand
Strand 2
D
124 125anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
343 345first strand
Strand 2
D
136 138parallel
Strand 3
D
127 132anti-parallel
Strand 4
D
72 76anti-parallel
Strand 5
D
105 109parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
72 76parallel
Strand 3
A
127 131anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
G
329 330anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 109first strand
Strand 2
B
72 76parallel
Strand 3
B
127 132anti-parallel
Strand 4
B
136 138anti-parallel
Strand 5
F
343 345parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
F
329 330anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 109first strand
Strand 2
C
72 76parallel
Strand 3
C
127 132anti-parallel
Strand 4
C
136 138anti-parallel
Strand 5
H
343 345parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 125first strand
Strand 2
H
329 330anti-parallel
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