Analysis of interatomic Contacts of Structural Units in PDB entry:
9I59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9I59 entry

There are 6 chains in PDB entry 9I59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 154	SER 469
B	ASP 155	LYS 465
H	VAL 2	CYS 216
L	ASP 1	CYS 214
X	VAL 2	GLU 212
Y	ASP 1	THR 206

There are 33 helices in PDB entry 9I59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	175	180	Right-handed alpha
Helix 2	AA2	A	191	196	Right-handed 310
Helix 3	AA3	A	200	206	Right-handed alpha
Helix 4	AA4	A	211	218	Right-handed alpha
Helix 5	AA5	A	232	234	Right-handed 310
Helix 6	AA6	A	237	245	Right-handed alpha
Helix 7	AA7	A	368	370	Right-handed 310
Helix 8	AA8	A	398	402	Right-handed 310
Helix 9	AA9	A	416	423	Right-handed alpha
Helix 10	AB1	B	175	180	Right-handed alpha
Helix 11	AB2	B	191	196	Right-handed 310
Helix 12	AB3	B	200	206	Right-handed alpha
Helix 13	AB4	B	211	218	Right-handed alpha
Helix 14	AB5	B	240	245	Right-handed alpha
Helix 15	AB6	B	368	370	Right-handed 310
Helix 16	AB7	B	386	393	Right-handed alpha
Helix 17	AB8	B	398	402	Right-handed 310
Helix 18	AB9	H	61	64	Right-handed 310
Helix 19	AC1	H	83	86	Right-handed 310
Helix 20	AC2	H	156	158	Right-handed 310
Helix 21	AC3	H	187	190	Right-handed 310
Helix 22	AC4	H	201	204	Right-handed 310
Helix 23	AC5	L	79	83	Right-handed 310
Helix 24	AC6	L	121	127	Right-handed alpha
Helix 25	AC7	L	183	188	Right-handed alpha
Helix 26	AC8	X	61	64	Right-handed 310
Helix 27	AC9	X	73	75	Right-handed 310
Helix 28	AD1	X	83	86	Right-handed 310
Helix 29	AD2	X	156	158	Right-handed 310
Helix 30	AD3	X	187	190	Right-handed 310
Helix 31	AD4	X	201	204	Right-handed 310
Helix 32	AD5	Y	79	83	Right-handed 310
Helix 33	AD6	Y	121	127	Right-handed alpha

There are 34 sheets in PDB entry 9I59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	266	270	parallel
Strand 3	A	256	260	anti-parallel
Strand 4	A	297	298	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	456	466	anti-parallel
Strand 3	A	321	324	anti-parallel
Strand 4	A	327	328	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	304	first strand
Strand 2	A	456	466	anti-parallel
Strand 3	A	337	347	anti-parallel
Strand 4	A	354	355	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	277	first strand
Strand 2	A	284	285	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	364	first strand
Strand 2	A	442	447	anti-parallel
Strand 3	A	450	452	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	397	first strand
Strand 2	A	372	375	anti-parallel
Strand 3	A	432	436	anti-parallel
Strand 4	A	413	415	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	230	first strand
Strand 2	B	266	270	parallel
Strand 3	B	256	260	anti-parallel
Strand 4	B	297	298	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	284	285	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	304	first strand
Strand 2	B	456	464	anti-parallel
Strand 3	B	339	347	anti-parallel
Strand 4	B	354	355	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	324	first strand
Strand 2	B	327	328	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	364	first strand
Strand 2	B	442	445	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	372	377	anti-parallel
Strand 3	B	432	436	anti-parallel
Strand 4	B	413	414	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	40	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	194	200	anti-parallel
Strand 3	H	205	211	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	66	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	144	150	anti-parallel
Strand 3	L	191	198	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	3	7	first strand
Strand 2	X	18	25	anti-parallel
Strand 3	X	77	82	anti-parallel
Strand 4	X	67	72	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	11	12	first strand
Strand 2	X	107	111	parallel
Strand 3	X	88	95	anti-parallel
Strand 4	X	33	40	anti-parallel
Strand 5	X	46	52	anti-parallel
Strand 6	X	57	59	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	11	12	first strand
Strand 2	X	107	111	parallel
Strand 3	X	88	95	anti-parallel
Strand 4	X	100	103	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	120	124	first strand
Strand 2	X	135	145	anti-parallel
Strand 3	X	176	185	anti-parallel
Strand 4	X	163	165	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	120	124	first strand
Strand 2	X	135	145	anti-parallel
Strand 3	X	176	185	anti-parallel
Strand 4	X	169	170	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	151	154	first strand
Strand 2	X	195	200	anti-parallel
Strand 3	X	205	210	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	4	7	first strand
Strand 2	Y	19	25	anti-parallel
Strand 3	Y	70	75	anti-parallel
Strand 4	Y	62	66	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	10	14	first strand
Strand 2	Y	102	107	parallel
Strand 3	Y	84	90	anti-parallel
Strand 4	Y	33	38	anti-parallel
Strand 5	Y	45	49	anti-parallel
Strand 6	Y	53	54	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	10	14	first strand
Strand 2	Y	102	107	parallel
Strand 3	Y	84	90	anti-parallel
Strand 4	Y	97	98	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	114	118	first strand
Strand 2	Y	132	139	anti-parallel
Strand 3	Y	173	179	anti-parallel
Strand 4	Y	159	163	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	145	146	first strand
Strand 2	Y	196	197	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9I59

Analysis of interatomic Contacts of Structural Units in PDB entry:
9I59