Analysis of interatomic Contacts of Structural Units in PDB entry:
9I6C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9I6C entry

There are 2 chains in PDB entry 9I6C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1GLU 356
B
 LEU 2LEU 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9I6C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
12 17Right-handed alpha
Helix 3
AA3
A
23 28Right-handed alpha
Helix 4
AA4
A
65 70Right-handed alpha
Helix 5
AA5
A
104 115Right-handed alpha
Helix 6
AA6
A
144 156Right-handed alpha
Helix 7
AA7
A
184 197Right-handed alpha
Helix 8
AA8
A
211 213Right-handed 310
Helix 9
AA9
A
254 258Right-handed 310
Helix 10
AB1
A
274 278Right-handed 310
Helix 11
AB2
A
287 309Right-handed alpha
Helix 12
AB3
A
315 326Right-handed alpha
Helix 13
AB4
A
346 356Right-handed alpha
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There are 3 sheets in PDB entry 9I6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
60 61anti-parallel
Strand 3
A
131 136parallel
Strand 4
A
37 42parallel
Strand 5
A
172 175parallel
Strand 6
A
200 204parallel
Strand 7
A
224 229parallel
Strand 8
A
247 250parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
215 216anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 269first strand
Strand 2
A
280 285anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il