Analysis of interatomic Contacts of Structural Units in PDB entry:
9I6F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9I6F entry

There are 14 chains in PDB entry 9I6F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
N	ASN 31	PRO 106
A	PHE 2	SER 513
B	MET 1	GLY 222
C	THR 2	SER 261
D	GLU 31	LYS 169
E	GLN 46	VAL 150
F	GLY 34	GLN 125
G	SER 34	ASP 108
H	ASP 4	ILE 86
I	VAL 5	LYS 75
J	HIS 23	LYS 80
K	LYS 28	ARG 78
L	SER 17	THR 63
M	ILE 26	PRO 68

There are 62 helices in PDB entry 9I6F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	N	35	43	Right-handed alpha
Helix 2	AA2	N	48	66	Right-handed alpha
Helix 3	AA3	N	73	105	Right-handed alpha
Helix 4	AA4	A	11	35	Right-handed alpha
Helix 5	AA5	A	37	42	Right-handed alpha
Helix 6	AA6	A	50	67	Right-handed alpha
Helix 7	AA7	A	69	75	Right-handed alpha
Helix 8	AA8	A	75	87	Right-handed alpha
Helix 9	AA9	A	94	104	Right-handed alpha
Helix 10	AB1	A	104	118	Right-handed alpha
Helix 11	AB2	A	140	171	Right-handed alpha
Helix 12	AB3	A	182	215	Right-handed alpha
Helix 13	AB4	A	228	246	Right-handed alpha
Helix 14	AB5	A	247	262	Right-handed alpha
Helix 15	AB6	A	269	285	Right-handed alpha
Helix 16	AB7	A	298	310	Right-handed alpha
Helix 17	AB8	A	312	328	Right-handed alpha
Helix 18	AB9	A	335	342	Right-handed alpha
Helix 19	AC1	A	346	353	Right-handed alpha
Helix 20	AC2	A	362	366	Right-handed 310
Helix 21	AC3	A	370	381	Right-handed alpha
Helix 22	AC4	A	385	401	Right-handed alpha
Helix 23	AC5	A	406	425	Right-handed alpha
Helix 24	AC6	A	425	435	Right-handed alpha
Helix 25	AC7	A	444	446	Right-handed 310
Helix 26	AC8	A	447	479	Right-handed alpha
Helix 27	AC9	B	14	47	Right-handed alpha
Helix 28	AD1	B	61	85	Right-handed alpha
Helix 29	AD2	B	124	128	Right-handed 310
Helix 30	AD3	B	215	220	Right-handed alpha
Helix 31	AD4	C	15	36	Right-handed alpha
Helix 32	AD5	C	40	66	Right-handed alpha
Helix 33	AD6	C	72	106	Right-handed alpha
Helix 34	AD7	C	128	153	Right-handed alpha
Helix 35	AD8	C	156	184	Right-handed alpha
Helix 36	AD9	C	190	224	Right-handed alpha
Helix 37	AE1	C	232	257	Right-handed alpha
Helix 38	AE2	D	56	67	Right-handed alpha
Helix 39	AE3	D	74	86	Right-handed alpha
Helix 40	AE4	D	89	95	Right-handed alpha
Helix 41	AE5	D	98	124	Right-handed alpha
Helix 42	AE6	D	134	148	Right-handed alpha
Helix 43	AE7	D	156	158	Right-handed 310
Helix 44	AE8	E	48	61	Right-handed alpha
Helix 45	AE9	E	66	79	Right-handed alpha
Helix 46	AF1	E	85	100	Right-handed alpha
Helix 47	AF2	E	102	117	Right-handed alpha
Helix 48	AF3	E	121	137	Right-handed alpha
Helix 49	AF4	F	46	58	Right-handed alpha
Helix 50	AF5	G	35	61	Right-handed alpha
Helix 51	AF6	H	5	11	Right-handed alpha
Helix 52	AF7	H	26	47	Right-handed alpha
Helix 53	AF8	H	57	62	Right-handed alpha
Helix 54	AF9	H	66	80	Right-handed alpha
Helix 55	AG1	I	13	55	Right-handed alpha
Helix 56	AG2	I	57	67	Right-handed alpha
Helix 57	AG3	J	26	35	Right-handed alpha
Helix 58	AG4	J	42	46	Right-handed 310
Helix 59	AG5	J	49	78	Right-handed alpha
Helix 60	AG6	K	32	59	Right-handed alpha
Helix 61	AG7	L	33	61	Right-handed alpha
Helix 62	AG8	M	36	61	Right-handed alpha

There are 7 sheets in PDB entry 9I6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	484	first strand
Strand 2	M	27	28	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	105	110	anti-parallel
Strand 3	B	95	102	anti-parallel
Strand 4	B	150	156	parallel
Strand 5	B	180	184	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	208	213	parallel
Strand 3	B	190	195	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	165	first strand
Strand 2	B	170	174	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	161	first strand
Strand 2	D	166	167	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	81	first strand
Strand 2	F	120	123	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	89	first strand
Strand 2	F	103	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9I6F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9I6F