Analysis of interatomic Contacts of Structural Units in PDB entry:
9I83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9I83 entry

There are 19 chains in PDB entry 9I83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 10	PRO 340
B	GLY 2	LEU 486
C	ARG 14	ASP 461
D	GLY 13	LEU 352
E	ARG 8	LYS 84
F	GLN 8	ARG 45
H	ALA 2	GLY 66
I	MET 1	LYS 35
J	ARG 7	LEU 40
K	LYS 10	ARG 46
L	MET 1	ASN 37
M	MET 1	LYS 34
T	MET 1	THR 30
V	ALA 27	TYR 163
X	THR 2	LYS 36
Y	ILE 19	LEU 46
Z	MET 1	VAL 62
1	CYS 22	SER 134
3	SER 32	SER 228

There are120 helices in PDB entry 9I83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	33	55	Right-handed alpha
Helix 3	AA3	A	70	74	Right-handed 310
Helix 4	AA4	A	95	99	Right-handed 310
Helix 5	AA5	A	101	108	Right-handed alpha
Helix 6	AA6	A	109	138	Right-handed alpha
Helix 7	AA7	A	142	159	Right-handed alpha
Helix 8	AA8	A	159	166	Right-handed alpha
Helix 9	AA9	A	167	171	Right-handed 310
Helix 10	AB1	A	176	191	Right-handed alpha
Helix 11	AB2	A	192	194	Right-handed 310
Helix 12	AB3	A	195	222	Right-handed alpha
Helix 13	AB4	A	232	237	Right-handed 310
Helix 14	AB5	A	247	259	Right-handed alpha
Helix 15	AB6	A	260	264	Right-handed 310
Helix 16	AB7	A	267	294	Right-handed alpha
Helix 17	AB8	A	316	332	Right-handed alpha
Helix 18	AB9	B	4	8	Right-handed 310
Helix 19	AC1	B	15	43	Right-handed alpha
Helix 20	AC2	B	54	59	Right-handed 310
Helix 21	AC3	B	62	69	Right-handed alpha
Helix 22	AC4	B	92	117	Right-handed alpha
Helix 23	AC5	B	120	124	Right-handed 310
Helix 24	AC6	B	134	156	Right-handed alpha
Helix 25	AC7	B	186	191	Right-handed 310
Helix 26	AC8	B	194	219	Right-handed alpha
Helix 27	AC9	B	222	229	Right-handed alpha
Helix 28	AD1	B	233	259	Right-handed alpha
Helix 29	AD2	B	271	275	Right-handed 310
Helix 30	AD3	B	278	294	Right-handed alpha
Helix 31	AD4	B	297	304	Right-handed alpha
Helix 32	AD5	B	306	313	Right-handed alpha
Helix 33	AD6	B	314	318	Right-handed 310
Helix 34	AD7	B	330	335	Right-handed alpha
Helix 35	AD8	B	391	396	Right-handed alpha
Helix 36	AD9	B	403	407	Right-handed 310
Helix 37	AE1	B	413	422	Right-handed alpha
Helix 38	AE2	B	446	475	Right-handed alpha
Helix 39	AE3	C	22	31	Right-handed 310
Helix 40	AE4	C	33	62	Right-handed alpha
Helix 41	AE5	C	68	72	Right-handed 310
Helix 42	AE6	C	76	83	Right-handed alpha
Helix 43	AE7	C	88	92	Right-handed 310
Helix 44	AE8	C	96	122	Right-handed alpha
Helix 45	AE9	C	141	169	Right-handed alpha
Helix 46	AF1	C	193	198	Right-handed alpha
Helix 47	AF2	C	199	203	Right-handed 310
Helix 48	AF3	C	211	215	Right-handed 310
Helix 49	AF4	C	217	241	Right-handed alpha
Helix 50	AF5	C	245	250	Right-handed alpha
Helix 51	AF6	C	255	281	Right-handed alpha
Helix 52	AF7	C	293	312	Right-handed alpha
Helix 53	AF8	C	354	358	Right-handed 310
Helix 54	AF9	C	364	371	Right-handed alpha
Helix 55	AG1	C	373	385	Right-handed alpha
Helix 56	AG2	C	409	442	Right-handed alpha
Helix 57	AG3	C	453	457	Right-handed 310
Helix 58	AG4	D	14	23	Right-handed alpha
Helix 59	AG5	D	33	52	Right-handed alpha
Helix 60	AG6	D	66	70	Right-handed 310
Helix 61	AG7	D	82	86	Right-handed 310
Helix 62	AG8	D	100	107	Right-handed alpha
Helix 63	AG9	D	108	137	Right-handed alpha
Helix 64	AH1	D	140	146	Right-handed alpha
Helix 65	AH2	D	146	158	Right-handed alpha
Helix 66	AH3	D	158	164	Right-handed alpha
Helix 67	AH4	D	174	190	Right-handed alpha
Helix 68	AH5	D	191	193	Right-handed 310
Helix 69	AH6	D	194	220	Right-handed alpha
Helix 70	AH7	D	245	257	Right-handed alpha
Helix 71	AH8	D	263	290	Right-handed alpha
Helix 72	AH9	D	298	307	Right-handed alpha
Helix 73	AI1	D	313	334	Right-handed alpha
Helix 74	AI2	D	335	338	Right-handed 310
Helix 75	AI3	E	9	16	Right-handed alpha
Helix 76	AI4	E	17	40	Right-handed alpha
Helix 77	AI5	E	41	48	Right-handed alpha
Helix 78	AI6	E	71	82	Right-handed alpha
Helix 79	AI7	F	17	42	Right-handed alpha
Helix 80	AI8	H	5	12	Right-handed alpha
Helix 81	AI9	H	13	15	Right-handed 310
Helix 82	AJ1	H	27	50	Right-handed alpha
Helix 83	AJ2	H	61	65	Right-handed 310
Helix 84	AJ3	I	2	25	Right-handed alpha
Helix 85	AJ4	I	27	31	Right-handed 310
Helix 86	AJ5	J	9	34	Right-handed alpha
Helix 87	AJ6	K	12	17	Right-handed 310
Helix 88	AJ7	K	18	23	Right-handed alpha
Helix 89	AJ8	K	24	26	Right-handed 310
Helix 90	AJ9	K	27	44	Right-handed alpha
Helix 91	AK1	L	13	37	Right-handed alpha
Helix 92	AK2	M	4	32	Right-handed alpha
Helix 93	AK3	T	2	23	Right-handed alpha
Helix 94	AK4	V	30	34	Right-handed alpha
Helix 95	AK5	V	48	63	Right-handed alpha
Helix 96	AK6	V	67	71	Right-handed 310
Helix 97	AK7	V	81	87	Right-handed alpha
Helix 98	AK8	V	94	104	Right-handed alpha
Helix 99	AK9	V	120	124	Right-handed 310
Helix 100	AL1	V	127	133	Right-handed 310
Helix 101	AL2	V	134	153	Right-handed alpha
Helix 102	AL3	V	153	158	Right-handed alpha
Helix 103	AL4	X	4	35	Right-handed alpha
Helix 104	AL5	Y	21	43	Right-handed alpha
Helix 105	AL6	Z	2	29	Right-handed alpha
Helix 106	AL7	Z	35	62	Right-handed alpha
Helix 107	AL8	1	32	50	Right-handed alpha
Helix 108	AL9	1	56	76	Right-handed alpha
Helix 109	AM1	1	79	83	Right-handed 310
Helix 110	AM2	1	84	104	Right-handed alpha
Helix 111	AM3	1	110	133	Right-handed alpha
Helix 112	AM4	3	32	36	Right-handed 310
Helix 113	AM5	3	53	71	Right-handed alpha
Helix 114	AM6	3	88	101	Right-handed alpha
Helix 115	AM7	3	128	134	Right-handed alpha
Helix 116	AM8	3	135	145	Right-handed alpha
Helix 117	AM9	3	147	152	Right-handed alpha
Helix 118	AN1	3	156	173	Right-handed alpha
Helix 119	AN2	3	193	198	Right-handed alpha
Helix 120	AN3	3	200	228	Right-handed alpha

There are 7 sheets in PDB entry 9I83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	169	first strand
Strand 2	B	176	179	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	336	347	anti-parallel
Strand 5	B	398	402	anti-parallel
Strand 6	B	410	411	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	336	347	anti-parallel
Strand 5	B	429	433	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	183	185	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	331	first strand
Strand 2	C	337	339	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	35	37	first strand
Strand 2	V	44	46	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	44	47	first strand
Strand 2	3	74	80	parallel
Strand 3	3	110	116	parallel
Strand 4	3	122	126	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9I83

Analysis of interatomic Contacts of Structural Units in PDB entry:
9I83