Analysis of interatomic Contacts of Structural Units in PDB entry:
9I8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9I8C entry

There is 1 chain in PDB entry 9I8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 41LEU 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9I8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 44Right-handed 310
Helix 2
AA2
A
45 62Right-handed alpha
Helix 3
AA3
A
79 87Right-handed alpha
Helix 4
AA4
A
94 108Right-handed alpha
Helix 5
AA5
A
133 135Right-handed 310
Helix 6
AA6
A
158 160Right-handed 310
Helix 7
AA7
A
182 201Right-handed alpha
Helix 8
AA8
A
221 233Right-handed alpha
Helix 9
AA9
A
258 263Right-handed alpha
Helix 10
AB1
A
264 280Right-handed alpha
Helix 11
AB2
A
282 287Right-handed 310
Helix 12
AB3
A
292 303Right-handed alpha
Helix 13
AB4
A
303 320Right-handed alpha
Helix 14
AB5
A
331 335Right-handed 310
Helix 15
AB6
A
338 352Right-handed alpha
Helix 16
AB7
A
356 364Right-handed alpha
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There are 5 sheets in PDB entry 9I8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
64 69anti-parallel
Strand 3
A
325 329anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 131first strand
Strand 2
A
113 120anti-parallel
Strand 3
A
161 164anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 141first strand
Strand 2
A
146 150anti-parallel
Strand 3
A
153 156anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
171 175anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
249 253anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il