Analysis of interatomic Contacts of Structural Units in PDB entry:
9I8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9I8J entry

There are 2 chains in PDB entry 9I8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 232GLY 571
B
 LYS 232GLY 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 9I8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
244 248Right-handed 310
Helix 2
AA2
A
491 500Right-handed alpha
Helix 3
AA3
B
491 499Right-handed alpha
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There are 8 sheets in PDB entry 9I8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 488first strand
Strand 2
A
459 466anti-parallel
Strand 3
A
534 536anti-parallel
Strand 4
A
523 528anti-parallel
Strand 5
A
511 518anti-parallel
Strand 6
A
555 560anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
261 266anti-parallel
Strand 3
A
459 466anti-parallel
Strand 4
A
534 536anti-parallel
Strand 5
A
523 528anti-parallel
Strand 6
A
567 568anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 297first strand
Strand 2
A
416 421anti-parallel
Strand 3
A
355 362anti-parallel
Strand 4
A
368 382anti-parallel
Strand 5
A
398 403anti-parallel
Strand 6
A
315 319anti-parallel
Strand 7
A
301 303anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 297first strand
Strand 2
A
416 421anti-parallel
Strand 3
A
355 362anti-parallel
Strand 4
A
368 382anti-parallel
Strand 5
A
389 390anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
485 488first strand
Strand 2
B
459 466anti-parallel
Strand 3
B
534 536anti-parallel
Strand 4
B
526 528anti-parallel
Strand 5
B
511 518anti-parallel
Strand 6
B
552 560anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
545 546first strand
Strand 2
B
261 266anti-parallel
Strand 3
B
459 466anti-parallel
Strand 4
B
534 536anti-parallel
Strand 5
B
526 528anti-parallel
Strand 6
B
511 518anti-parallel
Strand 7
B
523 524anti-parallel
Strand 8
B
567 568anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
416 421anti-parallel
Strand 3
B
354 362anti-parallel
Strand 4
B
368 382anti-parallel
Strand 5
B
398 403anti-parallel
Strand 6
B
315 319anti-parallel
Strand 7
B
301 303anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
416 421anti-parallel
Strand 3
B
354 362anti-parallel
Strand 4
B
368 382anti-parallel
Strand 5
B
389 390anti-parallel
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